Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01322 ATGGCTCTTACTTTAGGAACTACATTTTCTCATATACTCATATTTATAGGTTCACTCTTAATATTCCTAGTAACCCCTTCATCTTGTTTTAAGCCCAAAACACTTTTTAGTGTTTCTTCAAACTTCACAACTGATTCAGGTTATTCATCTACAATGGCTACTTGGTATGGACCTCCCGAAGGTGATGGGAGTGAAGGTGGTGCTTGTGGATACCAAAATGATGTTGGTCTTCCTCCTTTCAACTCAATGATATCAGCAGCAAACCCCTCCATCTATCAATCAGGCAAAGGTTGTGGTTCATGTTATCAGGTGAAGTGCACTGAAAATCCGGCTTGCTCGGGAAACCCTATTACTATAGTTATCACTGATGAGTGTCCTGGTTGTGATCATTATTTTGATTTGAGTGGAAAAGCTTTCGGTTCCATGGCAATTTCAGGTCAAGCTGACAATCTACGCAATGCTGGAAAAATACAAGTCGAATATCAAAGAGTTACATGCAATTACCCTGGTGTGCCGATAGCTTTCCATGTTGACTTTGGATCTAACCAAGACTATTTTGCAACTGTTATTGAATACGAGAATGGGGATGGTGATCTCAAAACAGTTGAAATCAAAGAAGAAAATTCGGAAACTTGGGAAGCTATGCAACAATCATGGGGTGCTGTTTGGAAATTTAATAAAGGGGCACAATTAAATGAACCATTTTCTATTAGGCTAACAACAATTGAGTCTGGAAAAATGTTTGTGGCTAATAATGTGATTCCTGTAGGTTGGAAGCCAGGTCAAACTTACCGAGCAATTGGAAATATTAATTAA 816 0.386 MALTLGTTFSHILIFIGSLLIFLVTPSSCFKPKTLFSVSSNFTTDSGYSSTMATWYGPPEGDGSEGGACGYQNDVGLPPFNSMISAANPSIYQSGKGCGSCYQVKCTENPACSGNPITIVITDECPGCDHYFDLSGKAFGSMAISGQADNLRNAGKIQVEYQRVTCNYPGVPIAFHVDFGSNQDYFATVIEYENGDGDLKTVEIKEENSETWEAMQQSWGAVWKFNKGAQLNEPFSIRLTTIESGKMFVANNVIPVGWKPGQTYRAIGNIN 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01322 271 SMART dpbb_1 84 161 IPR007112 -
Vivi6g01322 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Vivi6g01322 271 Pfam Lytic transglycolase 85 161 IPR009009 -
Vivi6g01322 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
Vivi6g01322 271 SUPERFAMILY Barwin-like endoglucanases 35 170 IPR036908 -
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vivi6g01322 271 Gene3D - 167 266 IPR036749 -
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vivi6g01322 271 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi6g01322 271 PANTHER EXPANSIN-B3 35 266 - -
Vivi6g01322 271 CDD DPBB_EXPB_N 53 166 - -
Vivi6g01322 271 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Vivi6g01322 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 171 IPR007112 -
Vivi6g01322 271 Gene3D - 32 166 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01322 Vivi-Chr6 53325116 53326597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01322 29 271 Expansin Gene Family AT1G65680 54.251 2.64e-97 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01322 - - gmx:548090 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01322 6 53325116 53326597 Vivi6g01322 6 53325116 53326597 ECH
Vivi6g01322 6 53325116 53326597 Vivi5g00953 5 21943398 21944844 PCT