Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01320 ATGCTTCAGAAATGGAACAAAATCTTCGTAATCACATGTGTAATGGCCATCTCTGTAGACCCTCTTTTCTTTTACATTCCGGTGATTGTCGATAAAAACAAATGTGTTGATTTGGATGAAGCGTTGCAGACTACTGCCAGTGTTTCCCGCACGTTCTTCGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTAGAACCGGATTCATTGCACCTTTTTCTCTTGTTTTCGGAAGAGGCGAACTCGTTGACGATCCTGTCGCCATAATGAAACGATACTTGAGTTCTCATTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGATTATTTGTTTGGCTATATTTCCACACATGAAAAATTCAGCTCCATTTGTAGCAAAGGATTTGTTAAAGTATGCAGTATTAATCCAGTATGTGCCGCGACTACTACGGATTTGTTTTATGCACTTTGGGAAGTATATGGAGGTTTTGAGACATGTTGGAGCAAGTTTGGAGACCAAAGGAAGAATTTTGGTTCAGCAAGGGCCGCTTAGCGGCCACTAA 549 0.3989 MLQKWNKIFVITCVMAISVDPLFFYIPVIVDKNKCVDLDEALQTTASVSRTFFDLFYILRIIFQFRTGFIAPFSLVFGRGELVDDPVAIMKRYLSSHFIIDILSIIPLPQIICLAIFPHMKNSAPFVAKDLLKYAVLIQYVPRLLRICFMHFGKYMEVLRHVGASLETKGRILVQQGPLSGH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01320 182 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 150 - -
Vivi6g01320 182 Pfam Ion transport protein 5 160 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi6g01320 182 SUPERFAMILY Voltage-gated potassium channels 3 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01320 Vivi-Chr6 53187597 53188487 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01320 2 168 Ion Channels AT5G53130 56.886 4.68e-61 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01320 K05391 - vvo:131613673 365.54