Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01318 ATGGGCCCACAACTTAAACCATGTGGACCCTCCTCTTACAAAACAGACCCACAATATAAAGTGTTTCAAGGAATCCAAAATTGTGAACCCTCCTCTTCCAAAACGGGTTCACAATTTAAACTACGTGGACCCTCCTCTTCTAAAACGGGTCCACAATTTAAACCACGTGGACCCTCCTCTTCTAAAGCGGACTCACAACTTAAAGCATTTCAAATAACCCAAAATTGTAGACCCTCCTCTTCTAAATCAGCCTCTTTGATTAAACCATTTAAAGTCTCCAAGAAGACAATATCTTCTGAAAACTTCAACAATAAGACATCATGGTCAAAGGTTCAAAGAACCAATGAACCTGAGGAAAACAACCCACCACTATTCAAAAGCTTTAAAAAGAAAGTTGAAGCTACAAAACCGCATTTACAGCAGCGTTATTCTGATGATGCAACTTCAAGTTACAGCAACAACAGAGAGAAAGACAGAACATCCTTTGAAAACCATTCGTCATTGATTTCTCATGAAAAGGCAAAGAACAAAGTAGAATTTGCATTGAAGCACTTTCAAACCTTTGTAAGGACGTCTACTCTTTCCGGTGATGCAATTCCTATTGAAGCGTCAAAAATTCTGAAACGTAGAGGCAAATTTGTTCACGATGAGAAAAAGATTATAGGAGATGTCCCAGGAATAGAAGTTGGTGACGAGTTTCAGTATTTTGAAGTACTCAATGTTGTTGGTCTCCATCGTAATATCTTCAATGGAATTGATCATGTTAGACATAAAGGGGAGTTGATTGCAACTAGCATTGTTTCTTGCCGGTTATATGATGATAAACTTGATGATGCCAAATTGGTGATTTCTACTGGAGAACAAGGTAATGTTATTAATAATCAAAATCAACTTAAAGAAAATCTCGCATTGATCAACAGTTATTTTGCTAAGAATCCTGTTAGAGTTATAATTAAGTTAAATTCAAAGAATGGTAGTGGTAGACTTAATGGTGGTGAAAAATATTGTTATTATGGTCTTTACAAGATTGATAGGATTGATCCAGAAATTGGAAAATCGGGTTACAAGCTTCTTTTGGTTAAATCACCTGATCAGAAAAAGGTTGTTTGCAGTGAATTGAGGAAGTATAAACAAATTGTGAAAAGGGAAAAGTGCTTGAAATATGTTGAAGATGTTTCTATGGGAAAAGAGTATCTTCCTATACCTATGATTAATTGTGTGGATTCCGAAAGTGTTCCGAATTTTCGATATATTACTCGTATGGTTAATCGGTGTAAGTCTAAAATGGTCAATCCTCTTAAAGGAAATGTTGGGTGTGAATGTGTTGGTAATTGTACTGATTCTGATAAATGTTCTTGTGCTGTGAAGAATGGGGGAAATTTTCCATTTAACAGGAATGGAACTATTGAGGCAACAAAAAAGGATATGGTTTATGAGTATGGTCCTTATTGTAAGTGTTCTTCGAAATGTCGCAATAGAGTTTCTCAAAATGGAATTAAATTTCCTCTTGAGATTTTCAAGACTGAGGCAAAAGGATGGGGTGTGCGATCAAAAAAGAAAATTCCTTCAGGAAGTTTTATATGTGAGTATTTAGGTGAGATAATTGAAGACAAGAAAGCTGTGAAAATGATTGACAACGACGAGTATTTATTTAACATTGGTAATACAAATCGCAAGGATGGCGTGTTTACCATTGATGCATGTAAGTATGGTAATGTGGCGAGATTTATCAACCACAGCTGTTGTCCGAATTTGTTTTGTCAAAATATTCTTTTTGATCATGATGATGTTAGGATGCCACACATCATGCTATTTGCAGCCGAAGACATTCCGCGGAAGACAGAGCTGACTTACAATTACAATTACAAGATAGGTCAAGTGGTTGATAAAGGAGTTGTGAAGAAGAAGTATTGCTATTGTGGAGCTTCCGAATGCGTTGGTAGACTGTATTAA 1953 0.3615 MGPQLKPCGPSSYKTDPQYKVFQGIQNCEPSSSKTGSQFKLRGPSSSKTGPQFKPRGPSSSKADSQLKAFQITQNCRPSSSKSASLIKPFKVSKKTISSENFNNKTSWSKVQRTNEPEENNPPLFKSFKKKVEATKPHLQQRYSDDATSSYSNNREKDRTSFENHSSLISHEKAKNKVEFALKHFQTFVRTSTLSGDAIPIEASKILKRRGKFVHDEKKIIGDVPGIEVGDEFQYFEVLNVVGLHRNIFNGIDHVRHKGELIATSIVSCRLYDDKLDDAKLVISTGEQGNVINNQNQLKENLALINSYFAKNPVRVIIKLNSKNGSGRLNGGEKYCYYGLYKIDRIDPEIGKSGYKLLLVKSPDQKKVVCSELRKYKQIVKREKCLKYVEDVSMGKEYLPIPMINCVDSESVPNFRYITRMVNRCKSKMVNPLKGNVGCECVGNCTDSDKCSCAVKNGGNFPFNRNGTIEATKKDMVYEYGPYCKCSSKCRNRVSQNGIKFPLEIFKTEAKGWGVRSKKKIPSGSFICEYLGEIIEDKKAVKMIDNDEYLFNIGNTNRKDGVFTIDACKYGNVARFINHSCCPNLFCQNILFDHDDVRMPHIMLFAAEDIPRKTELTYNYNYKIGQVVDKGVVKKKYCYCGASECVGRLY 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01318 650 MobiDBLite consensus disorder prediction 123 140 - -
Vivi6g01318 650 ProSiteProfiles SET domain profile. 501 621 IPR001214 GO:0005515
Vivi6g01318 650 SMART preset_2 389 485 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01318 650 ProSiteProfiles Post-SET domain profile. 634 650 IPR003616 -
Vivi6g01318 650 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 85 644 - -
Vivi6g01318 650 Pfam Pre-SET motif 393 493 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01318 650 MobiDBLite consensus disorder prediction 104 165 - -
Vivi6g01318 650 ProSiteProfiles YDG domain profile. 222 366 IPR003105 -
Vivi6g01318 650 ProSiteProfiles Pre-SET domain profile. 437 498 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vivi6g01318 650 SMART set_7 501 627 IPR001214 GO:0005515
Vivi6g01318 650 MobiDBLite consensus disorder prediction 104 121 - -
Vivi6g01318 650 MobiDBLite consensus disorder prediction 151 165 - -
Vivi6g01318 650 Pfam SET domain 512 621 IPR001214 GO:0005515
Vivi6g01318 650 Pfam SAD/SRA domain 221 361 IPR003105 -
Vivi6g01318 650 Gene3D - 205 383 IPR036987 -
Vivi6g01318 650 SUPERFAMILY PUA domain-like 207 370 IPR015947 -
Vivi6g01318 650 MobiDBLite consensus disorder prediction 27 67 - -
Vivi6g01318 650 SUPERFAMILY SET domain 382 630 IPR046341 -
Vivi6g01318 650 SMART G9a_1 217 365 IPR003105 -
Vivi6g01318 650 Gene3D SET domain 384 650 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01318 Vivi-Chr6 52946570 52948780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01318 210 650 EF-hand Containing Proteins AT5G13960 36.853 3.09e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g01318 SAD_SRA 1.2e-26 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01318 K11420 - psat:127129315 992.645