Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01315 ATGAGCCAGTGTGTTCCTAGCTGGGAAGTTGACGAAAATCCACAATCCCATGCAAGATCAGCCTCTCTTCGCTCCAACTCTAATTCAACTGCCCCTCATGATGTTCCCATGTTGGACTATGATGTTGCAGAACTGACATGGGAAAATGGACAAATTTCTATGCATGGTTTAGGGTTACCAAGAGTGCCGGTTAAACCGGTAGCAACCACACCATCCAAGGAAACATGGGAAAAGCCTCGTGGTAGCGGAACCTTGGAGTCCATAGTGAACCAAGCGACTAGCTTTCCACACCACGGTAAAGCACCGTTTCTCACTGCGGGTGGTGGTGTCTATGGGAACATGTTAGTCCCATGGCTTGACCCTCAACGAGCTGCGGCCATTGCCGCAGCTACGGCCGCAACTAATGGCATGATTGTGGACGCGTTGGTTCCCTGCCCCAATCTTAAGAAGGAGCAGAGACTACATGCACGAGATCCAATTCCTATGAGAGGTATTGGATCATGTATGGTCGGTGGCCCCACTCCCGTGGGGTCCTGTAGCGTTGTTGGAGCCACAGCGCAGGAGGAAGGCGGAATCTTTGCTTCGGCAAAGCGTGGAAGAGTGACAGCACATATGGCGGGGAGCGGAAGGGATCAGAGTATGAACAACAATGCGACGTTTGGGAGCCAAAGCCAACAAGTGACATTAGATACATATGACAGGGAATTTGGCGTGACTGCTGGTTTCACTTCAACTTCAATAGCATCCATGGATAACACCAGCTCTGATAAGCAGTGCACCAGAACCACAACCGTAGATGACCATGATTCTGTTTGCCACAGTAGACCAACTAGGAATGATGCTGAAGAGGATGATAAAAAGAGAGAAAATCGAAAATCGTCAGTCTCCACCAAAAGAAGCAGAGCTGCCGCTATACACAACCAATCCGAAAGAAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACCGATAAGGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAACAATTGCAAGCACAAGTGAACATGGTGAATAGATTCAGCATGTCATCCATGATGATGCCGATGACCATGCAGCAACAACTTCAAATGTCGATGATGAATCCAATGGGCATGGGAATGGGGCCGATGGGCATGGCGGGGATGGGAATGGGCATGGCTGGGATGGGGATGGGAATGGATATGAACCCTATGAATCGAGCTAACATCCCTGGGATGCCTCCAGTCCTCCATCCTTCAGCATTCATGCCTATGCCTGCATGGGATGCCGCTGCCGCCACCGCCACTGACCGACTTCAAGGGCCTCCGACAGCGGGGATGGCTGACCCTATGTCCACATTTTTTGGATGCCAATCACAGCCCATGACAATGGAGGCCTATAGTAGGATTGCTGCCATGTATCAGCAGATGCAGCAACAACCTCCAGCACCAGGTTCAAAGACTTGA 1485 0.497 MSQCVPSWEVDENPQSHARSASLRSNSNSTAPHDVPMLDYDVAELTWENGQISMHGLGLPRVPVKPVATTPSKETWEKPRGSGTLESIVNQATSFPHHGKAPFLTAGGGVYGNMLVPWLDPQRAAAIAAATAATNGMIVDALVPCPNLKKEQRLHARDPIPMRGIGSCMVGGPTPVGSCSVVGATAQEEGGIFASAKRGRVTAHMAGSGRDQSMNNNATFGSQSQQVTLDTYDREFGVTAGFTSTSIASMDNTSSDKQCTRTTTVDDHDSVCHSRPTRNDAEEDDKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVNMVNRFSMSSMMMPMTMQQQLQMSMMNPMGMGMGPMGMAGMGMGMAGMGMGMDMNPMNRANIPGMPPVLHPSAFMPMPAWDAAAATATDRLQGPPTAGMADPMSTFFGCQSQPMTMEAYSRIAAMYQQMQQQPPAPGSKT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01315 494 Coils Coil 307 327 - -
Vivi6g01315 494 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 42 488 IPR031066 -
Vivi6g01315 494 FunFam transcription factor UNE10 isoform X1 296 363 - -
Vivi6g01315 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 301 350 IPR011598 GO:0046983
Vivi6g01315 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 299 361 IPR036638 GO:0046983
Vivi6g01315 494 MobiDBLite consensus disorder prediction 247 314 - -
Vivi6g01315 494 SMART finulus 307 356 IPR011598 GO:0046983
Vivi6g01315 494 Gene3D - 296 360 IPR036638 GO:0046983
Vivi6g01315 494 CDD bHLH_AtPIF_like 301 356 IPR047265 -
Vivi6g01315 494 Pfam Helix-loop-helix DNA-binding domain 306 351 IPR011598 GO:0046983
Vivi6g01315 494 MobiDBLite consensus disorder prediction 1 33 - -
Vivi6g01315 494 MobiDBLite consensus disorder prediction 1 35 - -
Vivi6g01315 494 MobiDBLite consensus disorder prediction 261 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01315 Vivi-Chr6 52612629 52617381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01315 1 474 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 45.417 8.98e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi6g01315 HLH 7.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01315 - - gmx:100798775 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01315 6 52612629 52617381 Vivi6g01315 6 52612629 52617381 ECH