Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01302 ATGAAGTGCAGTAGTCACAAAGGGTTTTCTGAGAATTCACAAGGTGAGAGGATTTGTAGGATTTGTCATCTAGCTTTTGGACCTGCGTCAGATGCATCAATTGTCGAAAGTGCGAGCGCTACGAGTGGAGATTTTATTCAACTTGGTTGCGTGTGTAAAGACGAGCTCGACATTGCTCATGTTTATTGTGCTGAAGTGTGGTTCAAGCTAAAGGGAAGCAGATTATGTGAATTATGTGGCGAGACTGCAAAAAATGTCTCGGGTGTTACTACTAACAGAGTTATGGAAGAGTGGAATGATAGAAGATTCTCCGGAGATATTGCTGCTCAAATTAAGCACAATAACAAATCTCTTCATTTCAAAGTTGATACTGAATCAAATGTGTTGACGATATTTACTCTCACAGATTTCGTGACTTCTGCTAAAGCCGTTGCTTTTATTCGATTACCTGATTACAAATCCGGCAAGATTGAAGTTCAATATCTTCATGATCATGCTGGTTTTACTACTGCTGTTGATTTGAGTCGCAACACTAACTAA 540 0.3944 MKCSSHKGFSENSQGERICRICHLAFGPASDASIVESASATSGDFIQLGCVCKDELDIAHVYCAEVWFKLKGSRLCELCGETAKNVSGVTTNRVMEEWNDRRFSGDIAAQIKHNNKSLHFKVDTESNVLTIFTLTDFVTSAKAVAFIRLPDYKSGKIEVQYLHDHAGFTTAVDLSRNTN 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01302 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 81 IPR013083 -
Vivi6g01302 179 SUPERFAMILY RING/U-box 14 82 - -
Vivi6g01302 179 Gene3D Porin 82 179 IPR023614 -
Vivi6g01302 179 ProSiteProfiles Zinc finger RING-CH-type profile. 11 86 IPR011016 GO:0008270
Vivi6g01302 179 PANTHER ZINC FINGER, RING-CH-TYPE 9 107 - -
Vivi6g01302 179 SMART ringv_2 18 80 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01302 Vivi-Chr6 51706901 51709077 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01302 13 88 C3H Transcription Factor Family AT5G05830 48.684 1.25e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01302 - - vvo:131613659 368.237