Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01301 ATGAAGTGCAGTAGTCACAAAGGGTTTTCTGAGAATTCACAAGGTGAGAGGATTTGTAGGATTTGTCATCTGGCTTTTGGACCTGCGTCAGATGCAACAATTGTCGAAAGTGCGAGCGTTACGAGTGGAGATTTTATTCAACTTGGTTGCGTGTGTAAAGACGAGCTCGACATTGCTCATGTTTATTGTGCTGAAGTGTGGTTCAAGCTAAAGGGAAGCAGATTATGTGAAATATGTGGCGAGACTGCAAAAAATGTCTCGGGTGTTACTACTAACGGAGTTATGGAAGAGTGGAATGATAGAAGATTCATGGACAACAGCGGTAACTCATCGTGCAGGTTTGGTGGATGCCGGCGAGCACAGCCGTATTGTAATTTCTTGATGGTGTGCCTGGTAATAGCTTTCATTATGCCATGTTTTTTTCATGTAAACATGTTCTAG 441 0.4286 MKCSSHKGFSENSQGERICRICHLAFGPASDATIVESASVTSGDFIQLGCVCKDELDIAHVYCAEVWFKLKGSRLCEICGETAKNVSGVTTNGVMEEWNDRRFMDNSGNSSCRFGGCRRAQPYCNFLMVCLVIAFIMPCFFHVNMF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01301 146 PANTHER ZINC FINGER, RING-CH-TYPE 9 146 - -
Vivi6g01301 146 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Vivi6g01301 146 Pfam RING-variant domain 19 79 IPR011016 GO:0008270
Vivi6g01301 146 SMART ringv_2 18 80 IPR011016 GO:0008270
Vivi6g01301 146 SUPERFAMILY RING/U-box 14 82 - -
Vivi6g01301 146 ProSiteProfiles Zinc finger RING-CH-type profile. 11 86 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01301 Vivi-Chr6 51663369 51665336 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01301 13 145 C3H Transcription Factor Family AT5G05830 37.589 3.46e-26 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01301 - - vvo:131611516 314.694