Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01300 ATGATGGTAGGAGTTTCAAGTAGAACTCGTAGCAAGAATGTTCCTTCGTATGGTAGTCTTTCTCTTAGCCGGTCGTCAAAGCGGATAAAGAAAGAGGAAGATGATATGAGTTTTGCTGCCTCTGGTTCTAAGAAAAGAAAGGGAAAGAACGAACCGTTTGTGTTGCCTTCAGATGCTAAAGTTATTTTCATTGATGATGATGTTAAAGAAGAAGAAGAAAGTGAAGAAAACGGTGGGTTTGTTGATGAAAAGCCGACTGTTATACGTTTAGATGAATCCGGTGAAAGTGATGAAGAAGATTCAGATTGTGATGATAGTGAAGAAAATGAGTCAAGTGATGAAGATTTTAGCGTAAATGAAGTGAGTGAGGTTTCAGAGAGTGATGAAGATGGTTCATCATCATCTTGCTCTGCTTACGTGAATGAGATAAAGAGAGATAGTTCACGGAAATATCTGGAAGTGGTGGGGGAGATGGTGAGAAAGGTAATGGATGATGAAAATAGTGAGATTTCTGAGAAGAAAAATATTTCAAAGAGGAAAAAGATTAAGAGTAGTCAAGGTGAAGAAAGTGAAATTTCGAAGAAGAAAAAGATTAAGAGTAGTGATGGTGAAGAAAATGAGATTCCAAAGAAGAAAAAAATACTGAGTAGTGATGGTGAAGAAAATGAGATTTCAAAGAAGAAAAAAATACTGAGTAGTGATGGTGAAGAAAATGAGATTTCAAAGAAGAAAAAAATACTTAGTGATGGTGAAGAAAGTGAGATTTCAAAGAAGAAAAAGATTAAGGGTAGTGATGATGAAGAAAATGAGATTCCAAAGAAGAAAAAAATACTGAGTAGTGATGATAAATCGGAGGATGAAGATGATGGTAGTGTAGCAACAACAACTACTAGGGTCTTAGAGAAGAAGGGTGATTTTGATCCAACGGAGGGTTGTTGTTCTTCCTCTAAACTGAATGTAGCGTCGGAGAGAAAAAAGGAAAAAAATGTCTCTGATGTAAATGTGTTCAAATCCAAAGGCAAAGGTAGAGTTAAGCATAATGAAAGTTTGGATTTGGATCCTAATGAAGGAAAAGAACAGAATGTTCGAGGTGTAGGTGACGGTGAAGCAAGTGTTACGAAGATTGAAACAGAAGAGACGGTGATCAAGAAGAAAGGAAGTGATGATAAAGGTAAAGCCAGCATGCAGCATGACAAGAAAAAGGAAACAGTTGCTGCAAACAAAGGAAGAGATGATAAAGGTAAAGCCAGCATCCAAAGTGACAAGAAAAAAGAAACAGTTGCTGCAAACAAAGGTTTGAATCAGAGGGGCAAAAGCACACTTTTTATGCGGAAGGAGTTGCGTTTATTCGAACTCCTTGCTGAATTCTACTGGGGAGACAAGGATAATACAGTTAAGAATGATTCAACTCCATTCGAGGTGAAGAATGATGATGTTAATCGTCCCGAAACACGGCCACCGTCGGCTTCTGTGGAGACACGTCCGTTGATATGGAATCTTAAAAAGAAGGAAGTAGTGCAGAAGTCGAAGGAGGAGGAGGAGGTGGCTAAGTTATGGGATGAAATGGAGAGATCACTGAGAGAAATCGAAGCCGAATCTATGATTGGAAAATATGAAACTACTCATGAAAATTTGGGAAATCCATCCACTAGATGTGAGCACGATCTTCGTCTCGACGAGGAGATTGGGGTATACTGCAGATTATGCCGTTGGGTCGAAACTGAGATACGCTACGTCTCCGAACAAGTAGTGGATAAATTTCCCAATGAGGGTTCTAGAAAAAGAGCTGCATTTGATAATGTAAATGTCTCACATTTTGATGGATCACAGTTCAAACTTTCTGATAATTATTCAGATCAGTCCAATTTCAGCTTTCATGATCAAGGCACTGTTTGGGAGCTGATACCTGATGTCAAGAAGACCTTGTATCCTCACCAACAAGAAGGCTTCGAATTCATCTGGAAAAACTTGGCTGGAAGCATTGAGCTTAACAAGTTAAAGAATGCAGATCCTCAACGCGAGGGTGGCTGCATTATGTCGCACGCTCCTGGAACTGGAAAGACTAGGCTCACTATAGTCTTTCTCGCGACTTATCTGAGAGTTTTCCCAAAATGCTTGCCTGTTATAGTTGCTCCAGCGAGTTTGTTGCTTACTTGGGAGGAGGAGTTCAAAAAATGGGACATTGGATTTCCATTTCATAATTTGAGCAATCTTGAGTTATCTGGTAAAGAGCATGTTGATGCCCTTAATTTGGTTAGTCGGTCTAATAGCGGGGATACAACCCGGATGGCGAAACTGATTTCGTGGAACAAAGAAAGGAGCATCCTAGGAATCAGTTACAGTTTGTACGAGAAGCTAGCCGGAGGAGGAGGATCTCATGACAAGAAAAACAAAAAACACGAAATTATGGGAAATGTTTTGCGTGAGAAACCGGGTTTACTCGTGCTAGATGAAGGTCACACTCCGAGAAATAAGAAAAGTGGTATATGGAAGGAGTTGTCAAAGAGTCATACAAAGAAGCGAATTATTCTTTCGGGAACTCCTTTCCAGAACAATTTCTTGGAGCTGTATAACACTTTGAGCTTAGTGAAGCCTTCTTTTCCTAGCACATTACCGGATGAGCTGAAAAAGTTTTGCCAGAAGCCGGAACAGAAAAAAGCAACGAAAGAATGGAGTTGGAAACCGGATTCAGGTTCTGATGATAAGATCAAGCAGCTAAAATTGCATATGGATCCCTTAGTGCATGTTCACAAAGGAGCAATCCTTGAAAAGAAGCTTCCCGGGATAAGGAATCGTGTGCTGAGATTGAAAGCGGATAGTTTGCAGAAGCAAACTATTGAGAGCATTCAAAGTTCTCAGGGTACATTCACCTTTGAGCATAAGCTGACAATGGCATCCATTCATCCGTCACTTTTTCTCGAATGCGAGCTTTTGGAAAAAGAGGAATCTGTTCTCGACAAGGTCATGCTAGAAAAGGTCAGATTGGATCCCTACAGAGGTGTGAAAACAAAGTTTTTGGTGGAGTTTGTTAGACTCTGTGATGCTGCAAATGAGAAAGTGCTCGTGTTCAGTCAATTCATCAAACCGTTACGCTTAATTATAGAACAATTAAGCTTGGCCTGTAATTGGACAGAAGGGAAGGAAATGCTGTTCTTGGATGGAGAGGTTGATCTTAAGGGAAAACAATCCCTTATCCATAACTTCAATGGTGCAAATTGTCAAGCTAAGATTCTACTTGCATCGGTAAAAGCAAATTCCGAGGGAATCAGCTTAGTTGGAGCGTCGAGAGTTGTGCTTCTGGATGTTGTATGGAATCCGTCGGTCAAACGACAGGCTATCAGCAGAGCCTATCGGATTGGACAGAAGAGGGTTGTATACACGTACCATCTGCTCATTGACGGGACTACCGAGTGCGTGAAACATTGTAAGCAGGCGGAAAAGGATCGGTTATCTGAACTTGTTTTTCAAGCTAAGAATAATGGTAATGATGAGTTGGAGAAGAGTGGTGTGAAATTTGAAGACAGTATTCTTGAGAAAATGATACAGCACAAAGAGCTCAAAGACATGTTTGTTGAATGA 3579 0.4026 MMVGVSSRTRSKNVPSYGSLSLSRSSKRIKKEEDDMSFAASGSKKRKGKNEPFVLPSDAKVIFIDDDVKEEEESEENGGFVDEKPTVIRLDESGESDEEDSDCDDSEENESSDEDFSVNEVSEVSESDEDGSSSSCSAYVNEIKRDSSRKYLEVVGEMVRKVMDDENSEISEKKNISKRKKIKSSQGEESEISKKKKIKSSDGEENEIPKKKKILSSDGEENEISKKKKILSSDGEENEISKKKKILSDGEESEISKKKKIKGSDDEENEIPKKKKILSSDDKSEDEDDGSVATTTTRVLEKKGDFDPTEGCCSSSKLNVASERKKEKNVSDVNVFKSKGKGRVKHNESLDLDPNEGKEQNVRGVGDGEASVTKIETEETVIKKKGSDDKGKASMQHDKKKETVAANKGRDDKGKASIQSDKKKETVAANKGLNQRGKSTLFMRKELRLFELLAEFYWGDKDNTVKNDSTPFEVKNDDVNRPETRPPSASVETRPLIWNLKKKEVVQKSKEEEEVAKLWDEMERSLREIEAESMIGKYETTHENLGNPSTRCEHDLRLDEEIGVYCRLCRWVETEIRYVSEQVVDKFPNEGSRKRAAFDNVNVSHFDGSQFKLSDNYSDQSNFSFHDQGTVWELIPDVKKTLYPHQQEGFEFIWKNLAGSIELNKLKNADPQREGGCIMSHAPGTGKTRLTIVFLATYLRVFPKCLPVIVAPASLLLTWEEEFKKWDIGFPFHNLSNLELSGKEHVDALNLVSRSNSGDTTRMAKLISWNKERSILGISYSLYEKLAGGGGSHDKKNKKHEIMGNVLREKPGLLVLDEGHTPRNKKSGIWKELSKSHTKKRIILSGTPFQNNFLELYNTLSLVKPSFPSTLPDELKKFCQKPEQKKATKEWSWKPDSGSDDKIKQLKLHMDPLVHVHKGAILEKKLPGIRNRVLRLKADSLQKQTIESIQSSQGTFTFEHKLTMASIHPSLFLECELLEKEESVLDKVMLEKVRLDPYRGVKTKFLVEFVRLCDAANEKVLVFSQFIKPLRLIIEQLSLACNWTEGKEMLFLDGEVDLKGKQSLIHNFNGANCQAKILLASVKANSEGISLVGASRVVLLDVVWNPSVKRQAISRAYRIGQKRVVYTYHLLIDGTTECVKHCKQAEKDRLSELVFQAKNNGNDELEKSGVKFEDSILEKMIQHKELKDMFVE 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01300 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 885 IPR027417 -
Vivi6g01300 1192 Pfam Helicase conserved C-terminal domain 1013 1120 IPR001650 -
Vivi6g01300 1192 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 241 1191 IPR044567 GO:0080188
Vivi6g01300 1192 SMART helicmild6 1035 1120 IPR001650 -
Vivi6g01300 1192 Gene3D - 614 914 IPR038718 -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 372 425 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 65 140 - -
Vivi6g01300 1192 Pfam SNF2-related domain 656 957 IPR000330 GO:0005524|GO:0140658
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 469 491 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 162 425 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 25 53 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 1 24 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 1 53 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 162 283 - -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 320 363 - -
Vivi6g01300 1192 CDD SF2_C_SNF 1002 1131 - -
Vivi6g01300 1192 SMART ultradead3 638 878 IPR014001 -
Vivi6g01300 1192 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1005 1161 IPR001650 -
Vivi6g01300 1192 Gene3D - 927 1191 IPR027417 -
Vivi6g01300 1192 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 668 866 IPR014001 -
Vivi6g01300 1192 MobiDBLite consensus disorder prediction 93 127 - -
Vivi6g01300 1192 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 1168 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01300 Vivi-Chr6 51597176 51601556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01300 1015 1150 RAD5 or RAD16-like Gene Family AT5G43530 38.971 2.87e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01300 SNF2_N 5.7e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01300 K10875 - gmx:100806733 833.943