Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01290 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATACTAACGGTAACAGTAACAGTAACGGTTTCACTTGGGGTAGTAGTAGTAGTACTACTACGAGTAACAGTGCATGGAACAACAACACTTTCAACGTTGCCGTTGCCGTCAACCCTGGTTTAGACAACGCGGTGATGTTTCATCCACATGCAAACGAAGGCGGTGTACGGGAGGTTCGGGGGAGCTACACGGAGGCGTTCGGTGGAGGTTTGGCTAGGGCTCATCACGTGATGCCGGATCCGCATCTCACGTGTTTGAAGTTGGGGAAGAGGCATTATTTTGAGGATGTGAGTGGTGGAGGTGGAGGCGGTGGGGGTTTGGTGGATAAGAGAGGGAAAGGGTACTGTGGTGGGAAGGCGGTGGCGGGTTTGGCGGTGGGGAGTTCGGTGGCGAGGTGTCAGGTGGATGGGTGCCACGTGGGATTGATGAACGCGAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGATGGGTTTGGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTCCATGTTGTTTCGGAGTTTGATGATTCTAAGAGAAGTTGTAGGAGAAGACTGGCAGGACACAATGAGAGAAGAAGAAAGAGTTCCCACGATTCTGTTTCAAGGAGTTCATCACAAGGTGGGTGTGCTCTCTCTCTTCTGTCATCAAGGACTGATGCATGGCTTTCTCCCGATGATCTCTCCGTAAGATGCAGTGCTGCGTTAAGCGAATTGATAGCAGAAAACCGGGCAGCGATAATGGCTAGACAATTTGTCTCCGATAGAGACTGGCATTTGCAACACCATGCAGTGGAAGACTACAAAGAGATCCAACCCGAGTCCAACTATTTCCCGCAACAGATGTTTCCGCAGACACACTAA 945 0.4963 MDFGGNMFCLNNRDQNNTNGNSNSNGFTWGSSSSTTTSNSAWNNNTFNVAVAVNPGLDNAVMFHPHANEGGVREVRGSYTEAFGGGLARAHHVMPDPHLTCLKLGKRHYFEDVSGGGGGGGGLVDKRGKGYCGGKAVAGLAVGSSVARCQVDGCHVGLMNAKEYHRRHKVCEMHSKAPKVVVMGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVSRSSSQGGCALSLLSSRTDAWLSPDDLSVRCSAALSELIAENRAAIMARQFVSDRDWHLQHHAVEDYKEIQPESNYFPQQMFPQTH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01290 314 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Vivi6g01290 314 Gene3D - 141 210 IPR036893 GO:0003677|GO:0005634
Vivi6g01290 314 MobiDBLite consensus disorder prediction 213 235 - -
Vivi6g01290 314 FunFam Squamosa promoter-binding-like protein 14 141 210 - -
Vivi6g01290 314 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Vivi6g01290 314 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 28 242 IPR044817 GO:0003677
Vivi6g01290 314 MobiDBLite consensus disorder prediction 14 35 - -
Vivi6g01290 314 Pfam SBP domain 149 222 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01290 Vivi-Chr6 51225187 51228362 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01290 101 222 SBP-box Gene Family AT1G27370 54.032 1.92e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi6g01290 SBP 2.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01290 - - vvo:131621975 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01290 6 51225187 51228362 Vivi6g01290 6 51225187 51228362 ECH