Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01288 ATGGTTCGCTTCTCCAGGTCCTCCGCTCACCGCCTTCTCTACGCACTATGCTCCCCCTCCACCACCACCACAGTCTCTCCATCCCCAACCGGCTCCCTCATCGGCGGCACTTTCCACCTCCGACACTTCTCAGCCGGAAACGTGGCCCGTGCCAAGGCAGCGTCAGTCAACAAGGAGCCTTGGTGGATGGAGTCAATGGAAATGATTCGCAACATCGGTATCTCGGCACACATCGATTCCGGGAAGACGACTTTGACGGAGCGGGTACTGTTCTACACTGGTCGGATCCACGAGATCCATGAGGTGAGAGGGAAGGATGGCGTTGGTGCTAAGATGGATTCCATGGCGTTGGAGAGAGAGAAGGGAATCACTATTCAGTCTGCTGCTACTCATTGCACTTGGAAGGACTATAAGATTAACATAATTGACACACCTGGTCATGTTGATTTCACCATTGAGGTTGAAAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTGTTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATATGAGGTTCCAAGACTTGCATTTATTAACAAGCTTGATCGAATGGGAGCAGATCCATGGAAAGTAATAAATCAGGCTAGATCTAAGCTTCGGCATCATAATGCTGCAGTTCAAATTCCAATAGGTTTGGAAGATGATTTTAAGGGACTTGTTGATCTTGTAAAGCTAAAGGCCTATTATTTTCATGGTTCAAATGGCGAAAAAATTGTCATTGAAGAGGTGCCTTCAGATATGGAAGCCTTGGTGGCTGAAAAAAGACGCGAACTAATAGAAACTGTATCAGAGGTTGATGATATACTCGCTGAAGCGTTTCTGAGTGATGAACCCATTTCAGATGCTGATCTTGAGGGAGCAATTCGTAGAGCTACCATAGCACAAAAATTTATACCAGTATTCATGGGTAGTGCTTTCAAAAACAAGGGAGTACAGTCACTTCTGGACGGAGTACTTAGTTATTTGCCATGTCCAATTGAAGTTAGTAATAATGCTCTTGACCAATCTAAGAGCGAGGAGAAGATTGAGCTGACTGGAAGTCCTGATGGGCCCCTCGTAGCTTTGGCTTTCAAATTGGAGGAAAATAAGTTTGGGCAGTTATCATATCTAAGAATTTATGAGGGCGTCATTCGGAAGGGGGATTTTGTGACTAATGTTAACTCTGGCAAGAAGACCAAGATTTCTCGCTTGGGTCGGATGCATTCTAATGAATTGCAGGACATTCAGGAGGCCCATGCTGGCGAAATAATTGCTGTATTTGGTGTTGATTGTGCATCAGGAGATACTTTTACTGATGGGTCGGTTAAATACACAATGACATCTATGAATGTTCCTGAACCTGTGATGTCTTTAGCTGTACAGCCTGTCTCAAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAGAGAGGATCCTACTTTCCGTGTTGGCTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGAGAACTGCACTTAGATATCTATGTTGAACGCATTAAGAGAGAGTACAAGGTTGATGCTACAGTTGGAAAGCCCCGTGTGAACTTCAGAGAAACTGTTACTCAACGTGCTGAGTTTGATTATTTACATAAAAAGCAATCCGGAGGGCAAGGACAATATGGACGGGTGATTGGGTATATTGAACCACTTCCTGCTGAGTCGGGAACTAAGTTTGAATTTGAAAACATGCTTGTTGGCCAAGCTGTTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAGAGAAGCTGCCAACTCTGGTGCCTTAATTGGACATCCAGTTGAAAATCTCCGAGTTGTTTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGCGAACTTGCCTTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTACACAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAAGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTCTGATTGTTGGCAATGATCAGGACGGGGATGATTCTGTCCTTACAGCTCAAGTCCCTCTTAACAATATGTTTGGATATTCTACAGCTCTTCGTTCCATGACACAGGGAAAGGGTGAATTCACAATGGAATATAAGCAACATGCACCGGTTTCTCATGATGTACAAACCCAATTGATAAACGCATACAAGGGCACTCAGGCGGCTGAATGA 2277 0.4444 MVRFSRSSAHRLLYALCSPSTTTTVSPSPTGSLIGGTFHLRHFSAGNVARAKAASVNKEPWWMESMEMIRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMALEREKGITIQSAATHCTWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVFCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVINQARSKLRHHNAAVQIPIGLEDDFKGLVDLVKLKAYYFHGSNGEKIVIEEVPSDMEALVAEKRRELIETVSEVDDILAEAFLSDEPISDADLEGAIRRATIAQKFIPVFMGSAFKNKGVQSLLDGVLSYLPCPIEVSNNALDQSKSEEKIELTGSPDGPLVALAFKLEENKFGQLSYLRIYEGVIRKGDFVTNVNSGKKTKISRLGRMHSNELQDIQEAHAGEIIAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQREDPTFRVGLDPESGQTIISGMGELHLDIYVERIKREYKVDATVGKPRVNFRETVTQRAEFDYLHKKQSGGQGQYGRVIGYIEPLPAESGTKFEFENMLVGQAVPSNFIPAIEKGFREAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYTASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGLIVGNDQDGDDSVLTAQVPLNNMFGYSTALRSMTQGKGEFTMEYKQHAPVSHDVQTQLINAYKGTQAAE 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01288 758 CDD EFG_III 463 538 IPR009022 -
Vivi6g01288 758 Pfam Elongation factor G, domain IV 537 656 IPR005517 GO:0005525
Vivi6g01288 758 FunFam Elongation factor G, mitochondrial 60 347 - -
Vivi6g01288 758 FunFam Elongation factor G, mitochondrial 352 465 - -
Vivi6g01288 758 Hamap Elongation factor G [fusA]. 65 751 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vivi6g01288 758 NCBIfam small GTP-binding protein domain 70 242 IPR005225 GO:0005525
Vivi6g01288 758 CDD mtEFG1_C 663 740 IPR035649 -
Vivi6g01288 758 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 113 128 IPR031157 -
Vivi6g01288 758 Gene3D - 543 748 IPR014721 -
Vivi6g01288 758 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 32 750 - -
Vivi6g01288 758 PRINTS GTP-binding elongation factor signature 120 128 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 PRINTS GTP-binding elongation factor signature 140 150 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 PRINTS GTP-binding elongation factor signature 192 201 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 PRINTS GTP-binding elongation factor signature 156 167 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 SMART EFG_C_a 660 747 IPR000640 -
Vivi6g01288 758 NCBIfam elongation factor G 66 752 IPR004540 GO:0003746|GO:0005525|GO:0006414
Vivi6g01288 758 SUPERFAMILY EF-G C-terminal domain-like 460 537 IPR035647 -
Vivi6g01288 758 Pfam Elongation factor Tu GTP binding domain 69 341 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 CDD mtEFG1_II_like 370 450 - -
Vivi6g01288 758 CDD EF-G 71 343 - -
Vivi6g01288 758 Pfam Elongation factor Tu domain 2 383 449 IPR004161 GO:0005525
Vivi6g01288 758 Gene3D - 664 734 - -
Vivi6g01288 758 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 344 IPR000795 GO:0003924|GO:0005525
Vivi6g01288 758 Pfam Elongation factor G C-terminus 661 746 IPR000640 -
Vivi6g01288 758 Pfam Elongation Factor G, domain III 462 536 IPR041095 -
Vivi6g01288 758 Gene3D Elongation Factor G (Translational Gtpase), domain 3 469 542 - -
Vivi6g01288 758 FunFam Elongation factor G 543 677 - -
Vivi6g01288 758 FunFam Elongation factor G 664 734 - -
Vivi6g01288 758 Gene3D - 56 346 IPR027417 -
Vivi6g01288 758 FunFam Elongation factor G 466 542 - -
Vivi6g01288 758 SMART EFG_IV_2 538 658 IPR005517 GO:0005525
Vivi6g01288 758 Gene3D Translation factors 350 468 - -
Vivi6g01288 758 SUPERFAMILY Translation proteins 308 460 IPR009000 -
Vivi6g01288 758 SUPERFAMILY EF-G C-terminal domain-like 660 751 IPR035647 -
Vivi6g01288 758 CDD EFG_mtEFG1_IV 541 654 IPR005517 GO:0005525
Vivi6g01288 758 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 341 IPR027417 -
Vivi6g01288 758 SUPERFAMILY Ribosomal protein S5 domain 2-like 537 659 IPR020568 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01288 Vivi-Chr6 51024569 51046085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01288 385 545 Eukaryotic Initiation Factors Gene Family AT3G22980 24.157 8.82e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01288 K02355 - gmx:100783315 1331.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g01288 6 51024569 51046085 Vivi6g01288 6 51024569 51046085 ECH