Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01282 ATGAAAAACATTTTACTAAAGACCTGCAATTGTACCAAGTTTGGATTTGGTAGCTGTAGAAACAGTGAAAATTGTAATTTTGCACATGGGGTTGAAGAGATAAGGCAGCCACCACCAATTTGGAAGGAGCTTGTCGGTCCTCGTACTGAAGAGCAGTTGCAATTGGGCGGGAATTGGAATGATGACCAGAAAATCATTCATAAGATTAATCTTTGCAAGAAGTATTGCAGTGGTGAGGAGTGTCCTTATGGTGATAAGTGTAGCTTTCTTCATGAGAATCCTGCTAAGTTTAGGGATGACTCTTGGAAAAAAGAGTCCTATGCGGCCGTCATTAGAACTTATTGTTGA 348 0.4023 MKNILLKTCNCTKFGFGSCRNSENCNFAHGVEEIRQPPPIWKELVGPRTEEQLQLGGNWNDDQKIIHKINLCKKYCSGEECPYGDKCSFLHENPAKFRDDSWKKESYAAVIRTYC 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01282 115 SMART c3hfinal6 66 93 IPR000571 GO:0046872
Vivi6g01282 115 SMART c3hfinal6 5 31 IPR000571 GO:0046872
Vivi6g01282 115 ProSiteProfiles Zinc finger C3H1-type profile. 71 94 IPR000571 GO:0046872
Vivi6g01282 115 SUPERFAMILY CCCH zinc finger 66 93 IPR036855 GO:0046872
Vivi6g01282 115 ProSiteProfiles Zinc finger C3H1-type profile. 10 32 IPR000571 GO:0046872
Vivi6g01282 115 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 94 IPR045877 GO:0003729
Vivi6g01282 115 Pfam CCCH-type zinc finger 71 91 IPR041367 -
Vivi6g01282 115 SUPERFAMILY CCCH zinc finger 4 36 IPR036855 GO:0046872
Vivi6g01282 115 Gene3D - 1 36 - -
Vivi6g01282 115 Gene3D - 63 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01282 Vivi-Chr6 50753978 50754325 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01282 17 91 C3H Transcription Factor Family AT1G68200 29.333 6.16e-06 41.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi6g01282 zf-CCCH 0.00014 CL0537