Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01277 ATGATTTTTTCCATCTTATTGATGGGATTGGGAAAGACACTGCAAGCTATCTCTTTTTTAAGCTATTTGAAAGTACACCAGTTGTCACATGGGCCATTTTTGGTTTTATGCCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTGTTAAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGAAGCCAACACATGATGTCAGTTTGCCTTTTGATGTACTGTTAACAACATATGACATTGCATTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGCATGCAATCATCGATGAAGCCCAAAGGCTAAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACTGTTGTTGATGACCGGCACACCTATTCAGAACAACCTTTCTGAATTGTGGGCGTTGATGTCTTTTTGCATGCCATCTGTGTTTGGGTCACTAAATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTAACATCAGTTAATGATTCTCCAAAGGTTAAAGAGCGACTTCAAATCCTGAGAAGTGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGAATGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCCACATGTCAATTCTGAGGAAGGAACTTCCAAAGCTAGTTGCACTATCTTCTGGGACATCCAATCATCAATCACTACATAATACTGTGATACAACTAAGGAAAGCATGCAGTCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTATTGATTCTGGACCAACTTCTTCGAAAGCTACATCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAACGTCTTGATGGATCAATCAGAGCTGAGGAGCGCTTTTCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATATGGGCTTGAATTTTGAAGCTGGTCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCCGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGAGCTGAAAGAAAATTGCAGCTGAGCCTCAATGTAACTGGTGATAATATTCTAGAAAATGAAGATAAAAAGTTATCTACAGTTGGAACAAATGATTTGAAGTCCATCATTGTTGGGTTACATATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGACATCATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTAATTGCTATGCGCGATGAACAAATATTTGATAAGGACGATAGGAAGTTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAACGAAAGAGGTTCTGCTTCTCTCTCTTGTGATATTGATCTTGATGAGGCTTCTTATCTTTCTTGGGTTAAAAAATTTGAGGAAATTTCTAAATCAAGTAGCGACTCAATCACTGACTTGAGAAGCAGAAGGAACTTAGATGAGGAAAAGAGTCAAAAACTAGAGATTGCAAAGCAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCCGTTGGATACCATTCTTTGAATGTTAAAAACCCTATTAGCCCACCAGATGAGGATGTCACATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAACTCCCTCAAACGTTTCTTCATCTGATCCGGCTATAATCTTTAGCTGTGTTGACACTTCTGGACGTTGGGGCCATGGAGGAATGTTTGATGCACTGACCAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTCTGAACACGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAGAATTTGGACGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAACCCAAGGCGTAATGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCGAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCGTCAATACACATGCCACGGATTGGTTATCAAGATGGATCTAATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAACATATACGTGTATTATTATCGAAGATAA 2460 0.3976 MIFSILLMGLGKTLQAISFLSYLKVHQLSHGPFLVLCPLSVTDGWVSEIVKYAPKLEVLKYVGDKEYRRSLRMKTHEHVTRKPTHDVSLPFDVLLTTYDIALMDKDFLSQIPWQHAIIDEAQRLKNPSSVLFNVLKDRYIMPRLLLMTGTPIQNNLSELWALMSFCMPSVFGSLNQFLSTFKDISDLTSVNDSPKVKERLQILRSVLAAFMLRRTKSKLMENGSLVLPPLTETTVLVPLVSLQKKVHMSILRKELPKLVALSSGTSNHQSLHNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFSAIRSFSNSSANMGLNFEAGQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILENEDKKLSTVGTNDLKSIIVGLHMFDPNEINDGKDKDIMDLTEINAMADKVIAMRDEQIFDKDDRKFEVNPRNFLKGYDVNERGSASLSCDIDLDEASYLSWVKKFEEISKSSSDSITDLRSRRNLDEEKSQKLEIAKQKAEEKKLSKWNAVGYHSLNVKNPISPPDEDVTLDAGSVHFVYGDCTTPSNVSSSDPAIIFSCVDTSGRWGHGGMFDALTKLSSSISDAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRNVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSNRSQWYTIERLLRKYASMYNINIYVYYYRR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01277 819 Gene3D - 226 536 IPR027417 -
Vivi6g01277 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 221 490 IPR027417 -
Vivi6g01277 819 Coils Coil 596 616 - -
Vivi6g01277 819 FunFam Putative helicase CHR10 225 537 - -
Vivi6g01277 819 CDD Macro_Poa1p-like_SNF2 648 806 - -
Vivi6g01277 819 CDD SF2_C_SNF 300 443 - -
Vivi6g01277 819 Gene3D Leucine Aminopeptidase, subunit E, domain 1 648 819 IPR043472 -
Vivi6g01277 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 214 IPR027417 -
Vivi6g01277 819 SMART helicmild6 337 432 IPR001650 -
Vivi6g01277 819 Gene3D - 7 225 IPR038718 -
Vivi6g01277 819 SUPERFAMILY Macro domain-like 649 816 IPR043472 -
Vivi6g01277 819 Pfam Helicase conserved C-terminal domain 308 432 IPR001650 -
Vivi6g01277 819 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 169 IPR014001 -
Vivi6g01277 819 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 8 540 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vivi6g01277 819 Pfam SNF2-related domain 8 287 IPR000330 GO:0005524|GO:0140658
Vivi6g01277 819 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 311 480 IPR001650 -
Vivi6g01277 819 SMART ultradead3 1 177 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01277 Vivi-Chr6 50318842 50330718 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01277 8 492 RAD5 or RAD16-like Gene Family AT1G02670 24.522 1.75e-25 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01277 SNF2_N 6e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01277 K20092 - gmx:100797182 1235.32