Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01276 ATGAACCTAAGATACGAACAGAGGCTCCAGGTCGCTGCTAGAATAATCCTCGACGACGATGCAAGCCCCGGCGACGCTCCGCCCAGTGAAGAAGAGCTTGGGATTAAAGCAACTCTCAAGCCACATCAAGTAGAAGGGGTTTCGTGGCTCATTAGGAGGTATAAACTCGGCGTCAACGTTGTCCTTGGGGATGAGATGGGATTGGGAAAGACACTGCAAGCTATCTCTTTTTTAAGCTATTTGAAAGTACACCAGTTGTCACATGGGCCATTTTTGGTTTTATGCCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAGTCAAATATGCCCCTAAACTAGAAGTGTTAAAATATGTTGGTGATAAAGAATATAGGCGCAGTCTACGTATGAAAACACATGAACATGTAACAAGGAAGCCAACACATGATGTCAGTTTGCCTTTTGATGTACTGTTAACAACATATGACATTGCATTGATGGATAAGGATTTTCTTTCTCAAATACCATGGCAGCATGCAATCATCGATGAAGCCCAAAGGCTAAAAAACCCGTCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATATCATGCCAAGACTGTTGTTGATGACCGGCACACCTATTCAGAACAACCTTTCTGAATTGTGGGCGTTGATGTCTTTTTGCATGCCATCTGTGTTTGGGTCACTAAATCAGTTCCTTTCTACATTCAAGGACATCAGTGATCTAACATCAGTTAATGATTCTCCAAAGGTTAAAGAGCGACTTCAAATCCTGAGAAGTGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGAATGGAAGTTTAGTGCTGCCACCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCCACATGTCAATTCTGAGGAAGGAACTTCCAAAGCTAGTTGCACTATCTTCTGGGACATCCAATCATCAATCACTACATAATACTGTGATACAACTAAGGAAAGCATGCAGTCATCCTTATCTCTTTCCGGGTATTGAACCCGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTATTGATTCTGGACCAACTTCTTCGAAAGCTACATCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACACATACACTTGACATTTTGCAGGATTATCTGGAGTTACGTAAGTATTCTTACGAACGTCTTGATGGATCAATCAGAGCTGAGGAGCGCTTTTCTGCAATAAGAAGTTTCAGCAACTCATCAGCTAATATGGGCTTGAATTTTGAAGCTGGTCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCCGGGGGAGTTGGCTTGAATCTCGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTAATTATGCGGAGAGCTGAAAGAAAATTGCAGCTGAGCCTCAATGTAACTGGTGATAATATTCTAGAAAATGAAGATAAAAAGTTATCTACAGTTGGAACAAATGATTTGAAGTCCATCATTGTTGGGTTACATATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGACATCATGGACTTAACAGAAATTAATGCAATGGCTGACAAGGTAATTGCTATGCGCGATGAACAAATATTTGATAAGGACGATAGGAAGTTTGAGGTCAATCCAAGAAACTTTTTAAAAGGATATGATGTTAACGAAAGAGGTTCTGCTTCTCTCTCTTGTGATATTGATCTTGATGAGGCTTCTTATCTTTCTTGGGTTAAAAAATTTGAGGAAATTTCTAAATCAAGTAGCGACTCAATCACTGACTTGAGAAGCAGAAGGAACTTAGATGAGGAAAAGAGTCAAAAACTAGAGATTGCAAAGCAGAAGGCAGAAGAAAAGAAGCTGTCTAAGTGGAATGCCGTTGGATACCATTCTTTGAATGTTAAAAACCCTATTAGCCCACCAGATGAGGATGTCACATTAGATGCTGGTTCTGTTCATTTTGTGTATGGAGATTGTACAACTCCCTCAAACGTTTCTTCATCTGATCCGGCTATAATCTTTAGCTGTGTTGACACTTCTGGACGTTGGGGCCATGGAGGAATGTTTGATGCACTGACCAAACTTTCATCAAGCATCAGTGATGCATATGAACGGGCTTCTGAACACGGGGATTTGCATCTTGGTGATCTCCATCTTATAAGGCTTGAAGATGGCTGTGATGATCAGAATTTGGACGGTAATGCTCCCAAAATGGTTGCTTTAGCTGTGGTTCAATCTTACAACCCAAGGCGTAATGTCCCTCGAAGTGAAATCTCACTTGTCCACTTGGAAAGCTGCTTATCGAAGGCAGCGTTCTCAGCTGCTCAAAATTCTGCGTCAATACACATGCCACGGATTGGTTATCAAGATGGATCTAATCGTTCTCAATGGTACACCATAGAACGGCTTCTAAGAAAATATGCCTCCATGTACAACATAAACATATACGTGTATTATTATCGAAGATAA 2634 0.4081 MNLRYEQRLQVAARIILDDDASPGDAPPSEEELGIKATLKPHQVEGVSWLIRRYKLGVNVVLGDEMGLGKTLQAISFLSYLKVHQLSHGPFLVLCPLSVTDGWVSEIVKYAPKLEVLKYVGDKEYRRSLRMKTHEHVTRKPTHDVSLPFDVLLTTYDIALMDKDFLSQIPWQHAIIDEAQRLKNPSSVLFNVLKDRYIMPRLLLMTGTPIQNNLSELWALMSFCMPSVFGSLNQFLSTFKDISDLTSVNDSPKVKERLQILRSVLAAFMLRRTKSKLMENGSLVLPPLTETTVLVPLVSLQKKVHMSILRKELPKLVALSSGTSNHQSLHNTVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLRKLHHYGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFSAIRSFSNSSANMGLNFEAGQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILENEDKKLSTVGTNDLKSIIVGLHMFDPNEINDGKDKDIMDLTEINAMADKVIAMRDEQIFDKDDRKFEVNPRNFLKGYDVNERGSASLSCDIDLDEASYLSWVKKFEEISKSSSDSITDLRSRRNLDEEKSQKLEIAKQKAEEKKLSKWNAVGYHSLNVKNPISPPDEDVTLDAGSVHFVYGDCTTPSNVSSSDPAIIFSCVDTSGRWGHGGMFDALTKLSSSISDAYERASEHGDLHLGDLHLIRLEDGCDDQNLDGNAPKMVALAVVQSYNPRRNVPRSEISLVHLESCLSKAAFSAAQNSASIHMPRIGYQDGSNRSQWYTIERLLRKYASMYNINIYVYYYRR 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01276 877 Gene3D - 22 283 IPR038718 -
Vivi6g01276 877 Gene3D - 284 593 IPR027417 -
Vivi6g01276 877 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 32 877 IPR031053 GO:0003678|GO:0006281|GO:0006338
Vivi6g01276 877 SMART ultradead3 35 235 IPR014001 -
Vivi6g01276 877 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
Vivi6g01276 877 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 538 IPR001650 -
Vivi6g01276 877 Pfam SNF2-related domain 57 345 IPR000330 GO:0005524|GO:0140658
Vivi6g01276 877 SMART helicmild6 395 490 IPR001650 -
Vivi6g01276 877 SUPERFAMILY Macro domain-like 707 874 IPR043472 -
Vivi6g01276 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 272 IPR027417 -
Vivi6g01276 877 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 51 227 IPR014001 -
Vivi6g01276 877 FunFam Putative helicase CHR10 283 595 - -
Vivi6g01276 877 Coils Coil 654 674 - -
Vivi6g01276 877 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 548 IPR027417 -
Vivi6g01276 877 CDD SF2_C_SNF 358 501 - -
Vivi6g01276 877 Gene3D Leucine Aminopeptidase, subunit E, domain 1 706 877 IPR043472 -
Vivi6g01276 877 CDD Macro_Poa1p-like_SNF2 706 864 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01276 Vivi-Chr6 50318842 50330720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01276 26 550 RAD5 or RAD16-like Gene Family AT1G02670 24.513 1.38e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vivi6g01276 SNF2_N 2.7e-49 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01276 K20092 - gmx:100797182 1339.32