Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01270 ATGGGGAGTATGGGTGAGTATGCTAGAAAACGGCGTCACTTTAGCTCCTTGTCACCCACACCTGAACTTGCCAAGAAGTTACCATTCTTGCCTGTTTCTGAAGATAAAAAGCTTGATATTGCTGTACTTCAGTATCAAAATCAAAAGCTTACACAGAAATTAGAGACTCAGAAGTTAGAATATGCAACTTTTGAGAATAATTTTTTTCAACTGAAGGAGAGGCAACAGTCATATGATTCTACTATAGCAGTAGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCGCGTTCTGCACACACAAGGGAGTCTAACCGCAAAGCATATTCCAGATTTGTATCAAGTACAGATGATGGTAGTTCGTCTTCTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGAAAGTTCCTCATCTTCTCACTTCGCAAATGAGATGGAGCAACATAGAGAAATTACTGCTGAAAAAGCTAAAAGCATTTTGAATAATATATTGACATTTATTAATAACTTTCGGTGTTTAAAAGATGGATTTCATACTGCACTACTGAAAAAGCTTCGAGGAGATGTTTCATGTGGGCAGATGTTATCCAATGATCTGGAGGTGGAAAGTAAAAACTTGAGATTGACATTAAGTGAACTTCACTTAAAGCACAAGTCTTTAGCAAGTGTTTTCCGAATTCAGAGGGATCTGGATGCAAAAAATAAAGCCGAGCTTAAACAATTAAAAGGAGAACTGGAAAGCATGGTCTCAGAGTTAGAAGAAAACAATCACAAACTTGCAACTCTTATGGTAGAAAAGGATGCAGCCAAAGGGGCAGTTCTGCCAGTATTAACTGTTGGGAATACACACATTCCTAATGATAAGATCAGAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTACTGAACCAAGCTTCAACACGATTAGTGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGGTTATTGCAGCAGTTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGTATTACCTCTTCCCATGCGTTCCAATTGGTTAAAGATCAGATAGAAAAATCAAAATCGGAAGTGCAGGAGTATCAGGCCTTATATGAGAAACTACAGGCTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTCAAAGATCTGTGACTGTTTCTGATCTTAGAGTTGCTGATATACGCACTGAGATACAGAAAATTATCAAGCAAAAAAATGTGATTGAAAACAAGCTTAAAGAGGAAGCAAGAGAACAGGGAAGGAAAGAAATTATTGCTGAATTTAAATCTCTGCTTTCTTCGTTTCCTGAGGAAATGGGATCCATGCAAAGTCAACTTAGCAAGTATAAAGAATCAGCTTCAGATCTCCATTCTCTGCGTGCAGATGTGCATTCTATTTCCGGTACTCTTGATCGGAAGGTAAAAGAATGTGACACATTATCTGTTAGGTCTGCTGGTCAACTTGCTGAGATAAACAGACTGCTTGCTGTGGTTCAAGATTTGCGAGTGACTCAGGATGAGATGAAGTTGATACTGCAAATGTATAGACACGAGACGATTGATTCAAGGGATGTCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAACTTCGAGTTAAAACCGCAAATGAATCAGAAGCCAGATCACAGCAAAACCTTGCTGCAGCTGAAGCTGAGATCGCAGACATGAGACATAGATTAGATGATTCTAAAAGGGAGATGTGTAAAATGTCTGATATGTTGAGATCTAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACCCAAAACCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCTAGACAAAAACAGGATTCTTTGATTTTGGAGAGGCGATTAATGGAACAAGAGAACCAGCAATCAAATGTATCCTTGAATTTATGCAATACCAAAGCTGCAAGAATTGAAGACCAGTCGAGGTTTTGCTCAGATCAGATTCAAAAACTTGAGGACAACAAACTTCAAAGTTCTGGCTGTTTGGAAAATACACAAAGAAGGCTATCAGATATTAGACCATCATCGCAACAGGTTAGGGAATCAGTGGTGGAACTGCAAGCTAGAATTACCAGTAGTCGGGTAACTCGTATGGAGTTACAGACCGAACTTGAGAAAGAAAGGTTTGCCCAAAAAACAGTAGAGGAAGATCTGGAGGTTGCTAGGAGAAACTTGTCACAACTTAAAGCACAAAATGAGGATTCCTCGGTAACTGATAAGCTTCAACAGGAACTTGGAGAGTACAGGGAAATTGTTAAGTGCAGTATCTGTCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACTCATGCATCCAAAAAATTGCTGGGAGTCGGCAGCGCAAATGTCCCCAATGTAGTGCATGCTTCGGGGCCAATGATATTAAGCCGGTTTATTTGTAA 2637 0.3898 MGSMGEYARKRRHFSSLSPTPELAKKLPFLPVSEDKKLDIAVLQYQNQKLTQKLETQKLEYATFENNFFQLKERQQSYDSTIAVVKKSWEQLVNDLESRSAHTRESNRKAYSRFVSSTDDGSSSSVQDVFLSRLLQTGATESSSSSHFANEMEQHREITAEKAKSILNNILTFINNFRCLKDGFHTALLKKLRGDVSCGQMLSNDLEVESKNLRLTLSELHLKHKSLASVFRIQRDLDAKNKAELKQLKGELESMVSELEENNHKLATLMVEKDAAKGAVLPVLTVGNTHIPNDKIRDKQKDLQDMESTLKELLNQASTRLVELKSLHEERIRLLQQLCDLQNTLKNLKCITSSHAFQLVKDQIEKSKSEVQEYQALYEKLQAEKDNLAWREREWYIKNDLADLFQRSVTVSDLRVADIRTEIQKIIKQKNVIENKLKEEAREQGRKEIIAEFKSLLSSFPEEMGSMQSQLSKYKESASDLHSLRADVHSISGTLDRKVKECDTLSVRSAGQLAEINRLLAVVQDLRVTQDEMKLILQMYRHETIDSRDVMEAREAEYRAWAHVQSLKSSLDEHNLELRVKTANESEARSQQNLAAAEAEIADMRHRLDDSKREMCKMSDMLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQDSLILERRLMEQENQQSNVSLNLCNTKAARIEDQSRFCSDQIQKLEDNKLQSSGCLENTQRRLSDIRPSSQQVRESVVELQARITSSRVTRMELQTELEKERFAQKTVEEDLEVARRNLSQLKAQNEDSSVTDKLQQELGEYREIVKCSICRDRTKEVVITKCYHLFCNSCIQKIAGSRQRKCPQCSACFGANDIKPVYL 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01270 878 Coils Coil 40 67 - -
Vivi6g01270 878 MobiDBLite consensus disorder prediction 99 124 - -
Vivi6g01270 878 CDD RING-HC_Bre1-like 819 876 - -
Vivi6g01270 878 Coils Coil 783 810 - -
Vivi6g01270 878 Coils Coil 673 693 - -
Vivi6g01270 878 SMART ring_2 826 864 IPR001841 -
Vivi6g01270 878 Coils Coil 580 614 - -
Vivi6g01270 878 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 807 878 IPR013083 -
Vivi6g01270 878 Pfam Zinc finger, C3HC4 type (RING finger) 826 864 IPR018957 GO:0046872
Vivi6g01270 878 Coils Coil 357 391 - -
Vivi6g01270 878 MobiDBLite consensus disorder prediction 110 124 - -
Vivi6g01270 878 SUPERFAMILY RING/U-box 818 877 - -
Vivi6g01270 878 Coils Coil 296 316 - -
Vivi6g01270 878 Coils Coil 416 443 - -
Vivi6g01270 878 Coils Coil 706 726 - -
Vivi6g01270 878 ProSiteProfiles Zinc finger RING-type profile. 826 865 IPR001841 -
Vivi6g01270 878 PANTHER RING FINGER PROTEIN-RELATED 1 878 IPR013956 GO:0004842|GO:0010390
Vivi6g01270 878 ProSitePatterns Zinc finger RING-type signature. 841 850 IPR017907 -
Vivi6g01270 878 SUPERFAMILY Bacterial hemolysins 165 382 - -
Vivi6g01270 878 Coils Coil 242 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01270 Vivi-Chr6 49847020 49865474 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01270 801 877 C3H Transcription Factor Family AT2G42030 31.250 9.32e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01270 K10696 - gmx:100790337 1300.42