Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01266 ATGGACAAATACAAGTGCAAACTTTGTAATAGAAGCTTCAACAATGGAAGAGCATTGGGAGGTCACATGAGATCTCACATGATGAATCTTCTTGTTACAAAACAAGAAGATTCGTCAAGAATGATTCAACTTAGTTTTGAAGGTGAATCAACTTCATCTTCTTCATCGTCATCCGAAGATGATGACGATGAAAAAGGTCTTAGTTATGGTCTTAGAGAGAATCCTAAGAGAAGCATTCGTCTTGTAGATCAAGAGTTCTCTTTTCCACCTGTGGATACAAGTTCGGTGATTCTTCAAGATGTAGAAAGTGAAAGTGAATCGTCGAAGAACAATCCGACTCGCAAAAGATCTAAAAGGGTATGGAAAATCCGTCACTTTGATCAAAAGTATTATAATGAATCTAGTATGAAAAAAGTGAAGTTTTTAAATAAAAATGACTCTTCTTCCGTTATTGATCATGAACCGGGTAGTTCGGTTTCTGATACAACAGAAGAAGATGTTGCGTTTTGTCTAATGAAATTGTCAAGAGACAAATGGGATAGACAAAATGAGCAATACGAGGAGTACGCAGAAGAAGAAGAAATAGATGATGATGACGAGGATCCTGAGATCGAAGAAGATGAAGAAGAGGAAGAAATTGATAGATCTTTAGAAGAGAGTGATGAATCTCAAGAGCTAATAAAAGTGAACAAGAGTAACAACAAAGTACGCAAAGGAAAATACAAATGTGAAACATGTAACAAAGTGTTTAAATCATATCAAGCATTAGGCGGACACCGCGCGAGTCACAAGAAGATTAAAACAAACATAACAATAGAAGAATCATCGCCCGAATTTGATGTTGTCGAGAAGAAAGTTCATGAATGTCCGGTTTGTCTTCGAGTTTTTAATTCCGGACAAGCACTTGGTGGACACAAAAGAACACATGTGATGCATGGATCAACAACATCAACAACAATTCCAATTTTTAGTACAAAAAAAGTTGGAAAAAGTGTTATAGATCTTAACCTCCCTGCACCAATTGATGAAGATGAGGTTAGTCAAATTGAGAATTCTGCTGTTTCAGATGCTGAATTTGTCAAAACTCATTAG 1092 0.3617 MDKYKCKLCNRSFNNGRALGGHMRSHMMNLLVTKQEDSSRMIQLSFEGESTSSSSSSSEDDDDEKGLSYGLRENPKRSIRLVDQEFSFPPVDTSSVILQDVESESESSKNNPTRKRSKRVWKIRHFDQKYYNESSMKKVKFLNKNDSSSVIDHEPGSSVSDTTEEDVAFCLMKLSRDKWDRQNEQYEEYAEEEEIDDDDEDPEIEEDEEEEEIDRSLEESDESQELIKVNKSNNKVRKGKYKCETCNKVFKSYQALGGHRASHKKIKTNITIEESSPEFDVVEKKVHECPVCLRVFNSGQALGGHKRTHVMHGSTTSTTIPIFSTKKVGKSVIDLNLPAPIDEDEVSQIENSAVSDAEFVKTH 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01266 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Vivi6g01266 363 Coils Coil 206 226 - -
Vivi6g01266 363 ProSitePatterns Zinc finger C2H2 type domain signature. 243 263 IPR013087 -
Vivi6g01266 363 MobiDBLite consensus disorder prediction 46 72 - -
Vivi6g01266 363 SUPERFAMILY beta-beta-alpha zinc fingers 3 263 IPR036236 -
Vivi6g01266 363 ProSitePatterns Zinc finger C2H2 type domain signature. 289 309 IPR013087 -
Vivi6g01266 363 Gene3D Classic Zinc Finger 2 65 - -
Vivi6g01266 363 Gene3D Classic Zinc Finger 238 309 - -
Vivi6g01266 363 MobiDBLite consensus disorder prediction 58 72 - -
Vivi6g01266 363 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 362 IPR044303 GO:0006355
Vivi6g01266 363 Coils Coil 176 196 - -
Vivi6g01266 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 287 314 IPR013087 -
Vivi6g01266 363 SUPERFAMILY beta-beta-alpha zinc fingers 283 311 IPR036236 -
Vivi6g01266 363 MobiDBLite consensus disorder prediction 185 224 - -
Vivi6g01266 363 MobiDBLite consensus disorder prediction 186 219 - -
Vivi6g01266 363 Pfam C2H2-type zinc finger 4 27 - -
Vivi6g01266 363 Pfam C2H2-type zinc finger 286 309 - -
Vivi6g01266 363 Pfam C2H2-type zinc finger 241 265 - -
Vivi6g01266 363 SMART c2h2final6 241 263 IPR013087 -
Vivi6g01266 363 SMART c2h2final6 4 26 IPR013087 -
Vivi6g01266 363 SMART c2h2final6 287 309 IPR013087 -
Vivi6g01266 363 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Vivi6g01266 363 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01266 Vivi-Chr6 49345194 49346827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01266 1 349 C2H2 Transcription Factor Family AT3G60580 43.978 4.80e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g01266 zf-C2H2_6 1.2e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01266 - - tpra:123890030 546.969