Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01261 ATGGCTTTTACATTGGGACATGTATTTTCTCATATTCTCATCTTTGTAAGCTTACTCTCAATATTCTTAGGGACCCCTTCCTCTTGTTTTAAACCGAAAAAGCTTTTTAGTGTTGCTTCCAACTTCACATCTGATGCAGATTGGCAGTCTACAATGGCTACATGGTATGGAGCACCAGAAGGTTTTGGAAGTGACGGTGGTGCTTGTGGATATGGAAAAGCTGTTAGTCAGCCTCCATACAACTCAATGATATCAGCTGGAAACCCATTCATCTACCAATCGGGCAAAGGCTGTGGCACATGTTATGAGGTGAAGTGTACAGAAAATTCTGCTTGCTCAGGCAACCCTGTTACGGTATTTATCACCGATGAGTGTCCTGGCTGTCCTCATTATTTTGATTTGAGCGGTAAAGCTTTCGGTTTAATGGCAAAATCAGGTCAAGCTAACAACCTACGTAATGCTGGAAAAATATCTGTTCAATATCAAAGGTAA 492 0.4126 MAFTLGHVFSHILIFVSLLSIFLGTPSSCFKPKKLFSVASNFTSDADWQSTMATWYGAPEGFGSDGGACGYGKAVSQPPYNSMISAGNPFIYQSGKGCGTCYEVKCTENSACSGNPVTVFITDECPGCPHYFDLSGKAFGLMAKSGQANNLRNAGKISVQYQR 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01261 163 Gene3D - 32 163 IPR036908 -
Vivi6g01261 163 Pfam Lytic transglycolase 85 161 IPR009009 -
Vivi6g01261 163 CDD DPBB_EXPB_N 48 163 - -
Vivi6g01261 163 PRINTS Expansin/Lol pI family signature 154 163 IPR007118 GO:0005576
Vivi6g01261 163 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vivi6g01261 163 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi6g01261 163 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi6g01261 163 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 163 IPR007112 -
Vivi6g01261 163 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vivi6g01261 163 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vivi6g01261 163 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vivi6g01261 163 SUPERFAMILY Barwin-like endoglucanases 36 163 IPR036908 -
Vivi6g01261 163 PANTHER EXPANSIN-B3 23 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01261 Vivi-Chr6 49166551 49167228 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01261 29 163 Expansin Gene Family AT1G65680 60.870 3.53e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01261 - - vvo:131611498 310.842