Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01259 ATGGCTTTTACGTTGGGACATGCATTTTCTCATATACTCATTTTTGTAAGCTTACTCTCAATATTCTTAGGGACCCCTTCCTCTTGTTTTAAACCAAAAATGCTTGTTAGTGTTGCTTCCAACTTCACATCTGATTCAGATTGGCAGCCTACAATGGCTACTTGGTATGGAGCTCCAGAAGGTTATGGAAGTGACGGTGGTGCTTGTGGATATGGAAAAGCTGTTAGTGGGCCTCCATATAACTCAATGATATCAGCTGGAAACCCTTTCATCTACCAATCAGGAAAAGGCTGTGGTTCATGTTATGAGGTGAAGTGCACAGAAAATTCTGCTTGCTCAGGCAACCCAGTTAAGGTATATATTACTGATGAGTGTCCTGGCTGTCCTCATTATTTTGACTTGAGTGGCAAAGCATTCGGTTCCATGGCAATTTCAGGTCAAGCTAACAACTTACGCAATGCTGGAAAAATATCTATTCAATATCAAAGAGTTGCATGCAACCACCTGGTGTAG 513 0.4152 MAFTLGHAFSHILIFVSLLSIFLGTPSSCFKPKMLVSVASNFTSDSDWQPTMATWYGAPEGYGSDGGACGYGKAVSGPPYNSMISAGNPFIYQSGKGCGSCYEVKCTENSACSGNPVKVYITDECPGCPHYFDLSGKAFGSMAISGQANNLRNAGKISIQYQRVACNHLV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01259 170 PANTHER EXPANSIN-B3 32 168 - -
Vivi6g01259 170 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Vivi6g01259 170 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Vivi6g01259 170 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Vivi6g01259 170 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Vivi6g01259 170 Pfam Lytic transglycolase 85 161 IPR009009 -
Vivi6g01259 170 SUPERFAMILY Barwin-like endoglucanases 34 168 IPR036908 -
Vivi6g01259 170 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Vivi6g01259 170 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Vivi6g01259 170 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Vivi6g01259 170 CDD DPBB_EXPB_N 48 166 - -
Vivi6g01259 170 Gene3D - 31 167 IPR036908 -
Vivi6g01259 170 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 170 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01259 Vivi-Chr6 48936487 48937417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01259 29 169 Expansin Gene Family AT1G65680 60.417 3.25e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01259 - - vvo:131611498 342.428