Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01258 ATGGCTTTTGCTTTAGGAAATCATATTCTCATCTTTGTAAGTTTACTCTCAATATTAGGGACCCCTTCCTCTTGTTTTAAACCAAGAAACCTTGTTAGTGTTGCTTCCAACTTCACATCTGATGCAGATTGGCCATCTACAATGGCTACATGGTATGGAGCTCCAGAAGGCGATGGAAGTGAAAATGGTGCTTGTGGATATGGAAAAGCTGTTGGTGGGCCTCCATACAACTCAATGATATCAGCTGGAAACCCTTCCATCTACGATTCAGGAAAAGGCTGTGGTTCATGTTATGAGATTAAGTGCACAGGAAATTCTGCTTGCTCGGGCAATCCTGTTAAAGTATTTATCACTGATTTGTGTCCTGAGTGTAGTCATTATTTTGATTTGAGTGGCCATGCTTTCGGTTCGCTGGCAAGTTCAGGTCAAGCTAACAACCTACGTGTTGCTGGAAAAATATCCGTTCAATATCAAAAAGTTGCATGCAATTAA 492 0.4106 MAFALGNHILIFVSLLSILGTPSSCFKPRNLVSVASNFTSDADWPSTMATWYGAPEGDGSENGACGYGKAVGGPPYNSMISAGNPSIYDSGKGCGSCYEIKCTGNSACSGNPVKVFITDLCPECSHYFDLSGHAFGSLASSGQANNLRVAGKISVQYQKVACN 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01258 163 Gene3D - 29 163 IPR036908 -
Vivi6g01258 163 PRINTS Expansin/Lol pI family signature 150 163 IPR007118 GO:0005576
Vivi6g01258 163 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Vivi6g01258 163 PRINTS Expansin/Lol pI family signature 84 102 IPR007118 GO:0005576
Vivi6g01258 163 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Vivi6g01258 163 PANTHER EXPANSIN-B3 29 163 - -
Vivi6g01258 163 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Vivi6g01258 163 PRINTS Major pollen allergen Lol pI signature 82 93 IPR005795 GO:0005576|GO:0019953
Vivi6g01258 163 PRINTS Major pollen allergen Lol pI signature 102 112 IPR005795 GO:0005576|GO:0019953
Vivi6g01258 163 SUPERFAMILY Barwin-like endoglucanases 32 163 IPR036908 -
Vivi6g01258 163 Pfam Lytic transglycolase 81 157 IPR009009 -
Vivi6g01258 163 SMART dpbb_1 80 157 IPR007112 -
Vivi6g01258 163 CDD DPBB_EXPB_N 44 162 - -
Vivi6g01258 163 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 163 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01258 Vivi-Chr6 48727001 48728023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01258 23 163 Expansin Gene Family AT1G65680 54.167 2.63e-51 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01258 - - vvo:131611498 284.648