Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01256 ATGAAGAAGACTCTCCCTGCTAATGGTAAAATCGCAAAGGATGCTAAAGAGATTCTCCATGAATGCGTCTTTGAGTTCATCAGCTTCATCGCCAACGAGGCCTCTGATAAGTGTCAAAGACAGAAGAGGAAGACGATTAACGATGATGATTTGCTTTGGGCGCTAGGTTTCGAGGATTATATTGATCCTCTTAAGATTTACCTTAAGATACAAGAGGTAAATTCTATTTCAGTTTACTGTTTTTCAATTTTTTGGTATTTTACTTTACAAGCTTTTCTGGTACCCCCGGTGAGAACAAATGAGAATTGGGTCCTCTGGCAATGTTTAAAGGGTTGTTTTGAATTTTTATTGTTGTTGTACTTTTTACTAATGGTAACTCTTTTTCTTTAA 390 0.3641 MKKTLPANGKIAKDAKEILHECVFEFISFIANEASDKCQRQKRKTINDDDLLWALGFEDYIDPLKIYLKIQEVNSISVYCFSIFWYFTLQAFLVPPVRTNENWVLWQCLKGCFEFLLLLYFLLMVTLFL 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01256 129 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vivi6g01256 129 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Vivi6g01256 129 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 69 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi6g01256 129 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Vivi6g01256 129 SUPERFAMILY Histone-fold 1 72 IPR009072 GO:0046982
Vivi6g01256 129 Gene3D Histone, subunit A 1 76 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01256 Vivi-Chr6 48618834 48619705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01256 1 68 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.465 2.45e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi6g01256 CBFD_NFYB_HMF 1.6e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01256 K08065 - apan:127252254 124.79