Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01252 ATGTGTTCCTTAGTTTTAGAGGTGAAGATACAAGGACAAGTTTCACAGGCTCTCTCTATCATGGCTTACACCAAAAGGGTATCAATGTTTTCGTTGATGATGAGAAGCTTAGAAGAGGAGAACAAATATCTCCATCTCTTATCACAGCCATTTGAAGAATCTAGGATTTCAATCATTGTGTTTTCCGAAAACTATGCTTCCTCAACTTGGTGTCTTGATGAGCTTGCCATGATTCTTGAGTGTTGGAAATCAAAAGGACAGTTGGTTTTTCCGGTTTTCTACTATGTTGACCCTTCTTGGATTAGGCATCAAAGAGGAAGCTTTGGAATAGCAATGGCTAAACATGAAGTCACATTCAAGGGTGATGCTCAAAGGTTGAACAAGTGGAAAAAAGCTTTGTTTGATGCAGCCAATTTGTCAGGTTGGAGCTTAAAAAATGGCCATGGGTATGAATATGAGCTTATCCTAAGGATCATTGATGAGGTTTGTAGCAAATTAAATAACACCCTTTTGCATATTGCGGAGCATCCGGTTGGACTAGAAACTCGCATATCCGAAGTAAAATCACTTTTGCAATTTGAAAAGCCTATTGAAGAAGTTTCTTTCTTTGGAATTCATGGACATGGAGGAATAGGCAAAACAACAATTGCAAGAGCATTGTACAACTCAATTGCTAATCACTTTGAAGTCACTAGTTTTCTTACTGATATAAGAGAAAGTTCAACTCAAAGACAAGGCTTAGTTCAACTTCAAGAAACACTTCTTTATGAAACAGTTGGTAAAAAAAACATTAAGCTAGGAAATGTTTATAAAGGAATTCCAATTATAAAGAAGAGATTATGTTGCCAAAAAGTACTTTTGATTCTTGATGATGTTGATAAGTTTGAACAGCTTCAAGCATTAGCAGGAGGACGCGATTGGTTCGGTTTCGGAAGTGTAGTAATCATAACAACAAGAGATAAACAGTTGTTAGCTTCTCATCTAGTTGATAAAACATATGAGGTAAAGAAATTGAATCATGAAGAAGCTTTTGAACTCTTTACATGGAATGCATTCAAAAGAAAAGCAAGTGATAAGGAGTATATGGAGATTTCGAACAACGTTGTGCTTTATGCTGAAGGACTTCCATTGGCTTTGAAAGTGATGGGATGTAATTTGTTTGGTAAAACAGTTGATGAATGGAAATCTGCATTGGCGAAATACGAAAAGATTCCTAATAAAGAAGTTCAAAATGTACTTAGAGTCACTTTTGATAATTTAGAAGAGAATGAAAAGGAGATTTTCTTGGATATAGCTTGTTTCTTCAAGGGTGAGACTGTTGAATATGTCGAAAAGACACTTCAAGCTTGTGGCTTCTTTCCGAAATTCGGTATCAGTGTACTTACGGATCGATCTCTTGTGAGTATTGATGAATATAATCTATTGAGAATGCACGATTAG 1440 0.3597 MCSLVLEVKIQGQVSQALSIMAYTKRVSMFSLMMRSLEEENKYLHLLSQPFEESRISIIVFSENYASSTWCLDELAMILECWKSKGQLVFPVFYYVDPSWIRHQRGSFGIAMAKHEVTFKGDAQRLNKWKKALFDAANLSGWSLKNGHGYEYELILRIIDEVCSKLNNTLLHIAEHPVGLETRISEVKSLLQFEKPIEEVSFFGIHGHGGIGKTTIARALYNSIANHFEVTSFLTDIRESSTQRQGLVQLQETLLYETVGKKNIKLGNVYKGIPIIKKRLCCQKVLLILDDVDKFEQLQALAGGRDWFGFGSVVIITTRDKQLLASHLVDKTYEVKKLNHEEAFELFTWNAFKRKASDKEYMEISNNVVLYAEGLPLALKVMGCNLFGKTVDEWKSALAKYEKIPNKEVQNVLRVTFDNLEENEKEIFLDIACFFKGETVEYVEKTLQACGFFPKFGISVLTDRSLVSIDEYNLLRMHD 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01252 479 Pfam NB-ARC domain 186 407 IPR002182 GO:0043531
Vivi6g01252 479 Pfam TIR domain 35 169 IPR000157 GO:0007165
Vivi6g01252 479 SMART till_3 9 139 IPR000157 GO:0007165
Vivi6g01252 479 Gene3D - 166 332 IPR027417 -
Vivi6g01252 479 Gene3D - 337 421 IPR042197 -
Vivi6g01252 479 Gene3D - 17 165 IPR035897 -
Vivi6g01252 479 PRINTS Disease resistance protein signature 202 217 - -
Vivi6g01252 479 PRINTS Disease resistance protein signature 279 293 - -
Vivi6g01252 479 PRINTS Disease resistance protein signature 372 386 - -
Vivi6g01252 479 SUPERFAMILY Toll/Interleukin receptor TIR domain 38 142 IPR035897 -
Vivi6g01252 479 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 479 IPR044974 GO:0006952
Vivi6g01252 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 431 IPR027417 -
Vivi6g01252 479 ProSiteProfiles TIR domain profile. 1 166 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01252 Vivi-Chr6 48009200 48011363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01252 178 479 WRKY Transcription Factor Family AT5G45050 36.634 3.48e-55 197
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01252 - - vvo:131613632 946.036