Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01249 ATGGACGCTGAAACTCAACGCAACGTTGAAGAAATGGTGATGGATTTACTCACAAAAGCCGAATTTGAACAAGCCACTGAGTTCACCATCCGAATTGCCGCTTCCAAACGACTCGGTCTCGACCTTTCCGACTCACACAGCAGGCAATTCGTCAGAAACATCATCGCCACCAACAAGAAACCGCCGCAAGTTTCCCCCGAGGCAGTCAAAGAACCGCCGCAAGAGTTGAATAAGGTGGCGGGAGTGAAATGCAAGAACGACGACTCTGATAAAGTCATTTGTGAGCTATCAAGCAACAGGAAGGTGACTGTGGGAGATTACAAAGGAAGGACCTTGGTGTCAATTAGGGAGTACTTTCTGAAAGATGGAAAACAACTTCCCACTCCTAAAGGGATGAGTTTATCTTCTCAACAATGGTTAGCCTTCAAGAATAGTGTTCCTGCCATAGAGGAAGCTATCACAGAGCTGGAAGGAAGGTTAAGGAGAAGATCAGGGCATAGTGGCTGGAAAAATGTTCCTGTTCAGCCTGTCTCTATTGAGCCTGTCTCTAAAGCACATGAGAGCTTAGTGAAGGCCTAA 579 0.4663 MDAETQRNVEEMVMDLLTKAEFEQATEFTIRIAASKRLGLDLSDSHSRQFVRNIIATNKKPPQVSPEAVKEPPQELNKVAGVKCKNDDSDKVICELSSNRKVTVGDYKGRTLVSIREYFLKDGKQLPTPKGMSLSSQQWLAFKNSVPAIEEAITELEGRLRRRSGHSGWKNVPVQPVSIEPVSKAHESLVKA 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01249 192 PANTHER RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR 3 158 IPR045125 GO:0003713|GO:0060261
Vivi6g01249 192 SUPERFAMILY ssDNA-binding transcriptional regulator domain 93 155 IPR009044 GO:0003677|GO:0006355
Vivi6g01249 192 Gene3D Transcriptional Coactivator Pc4; Chain A 83 159 IPR009044 GO:0003677|GO:0006355
Vivi6g01249 192 Pfam DEK C terminal domain 5 55 IPR014876 -
Vivi6g01249 192 FunFam RNA polymerase II transcriptional coactivator KELP 85 157 - -
Vivi6g01249 192 Pfam Transcriptional Coactivator p15 (PC4) 94 144 IPR003173 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01249 Vivi-Chr6 47787590 47790487 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Vivi6g01249 PC4 7.9e-18 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01249 K25815 - vvo:131611490 379.793