Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01171 ATGGAAAAAGATTACCACTCTCCAACAATACAAGGTACAGCCTCACCACGTTATGTCCTCTCTTCAGCCAAAATTTCTTCAACATATTCTCAAGATCCTCTCCAATCACTTGTGAATTTTTCCATTAACCGCACCATAGTCAACGACGCCGCACTCGTCTCTTACTCTCAAAACCTCACCGTTCTCGCATCCTCCGTCCTCCCACAGACGAGTCTCAGCCTTAGACCAGAACCACAGATGCTCGATTCAAAAACCGAACCTCCTGACAACAACTACCTCACGGTTGATGACTCCAACGAAGATCACGAAATCGTGGAGCTCGACTCCGTGGAACTGCTCGCGGAACATCCCCAGTTCTGTGGGATTTGCAGGAAAGGTTTCAAGCGCGACGCGAATCTCCGAATGCACATGCAAGCGCACGGGAACGATGTCAAGACACCTGAAGCGTTGGCGAAGACTTTCGACTACGGCGACACACAACGCGGTTCGAGGCGGTTCTCATGTCAGTTTGAAGGATGTCACAAAAACAAGAAGCATAGAAAATTCAAGGCGTTGAAATCAATGATATGTGTTAAGAATTGTTTCAAACGGAGTCATTATCCGAAGATGTATGCGTGTGATCGGTGTCATAAGAAGAAGTATTCGGTGCTTTTGGATTTGAAGAGCCATATGAAACAGTATGGTGGATATTGTAGGTGGAAGTGCTCATGTGGGACCATGTTTTCTAGGAAGGATAAGTTGTTTGGACATATTGGTCTATATGAGGGTCACATGTCTGCTGTTTTGGAAAATGATAATAATTGTGAAATGTTGAAAGAGCTGATATATCTTCCTAAGAAGCTACTAGGTTGGGTTTCTTTTGCAGTATGCATGGCTAAATGTTTCATTGTTCGAGTAGTAATTGCTAGTTTCTCTCAATTTATGTTGTGGGATCCTCAGAAGAAAAAAAAAATTATTTGGACATTATTTTTACAATCTTGA 981 0.4302 MEKDYHSPTIQGTASPRYVLSSAKISSTYSQDPLQSLVNFSINRTIVNDAALVSYSQNLTVLASSVLPQTSLSLRPEPQMLDSKTEPPDNNYLTVDDSNEDHEIVELDSVELLAEHPQFCGICRKGFKRDANLRMHMQAHGNDVKTPEALAKTFDYGDTQRGSRRFSCQFEGCHKNKKHRKFKALKSMICVKNCFKRSHYPKMYACDRCHKKKYSVLLDLKSHMKQYGGYCRWKCSCGTMFSRKDKLFGHIGLYEGHMSAVLENDNNCEMLKELIYLPKKLLGWVSFAVCMAKCFIVRVVIASFSQFMLWDPQKKKKIIWTLFLQS 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01171 326 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Vivi6g01171 326 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 89 266 IPR044300 GO:0010044|GO:0010447
Vivi6g01171 326 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01171 Vivi-Chr6 38940214 38941194 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01171 102 261 C2H2 Transcription Factor Family AT1G34370 54.545 5.36e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi6g01171 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01171 - - vvo:131613558 678.707