Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01170 ATGGCACAGCTAAACCTAACAATCATGGTCATTTTCCTCTCAATATTCTCATGTCTTGCACGAAAAGAACCATCATTAGCCCGTCATAACTCTCAAACTATTCAAAATAAAACCCAAACTCAAACTCAAACCCAAACCCGAACAAAAACAATGGAGTACATAGAGTCCTCGTGCCAAGGAACCCGGTATCCAGATCTATGCATCCGTTCGTTAGCCTCATTCGCCAAATATTCATCCATAAACGGACCTGACCACTTAGCCCACATAGCCCTTTCAGTAAGCCTAGTCAAAGCACTTCAAACAAGAGGCTACTTGTTAAAAATTGTTAAAGAAATCGAAGAAATCAACAACGGTAGCCAACCTGGTTACGTGTACTTAACCATGCAAGATTGCGAGAAACAAATCAGCGATAGTGTTGATCAACTTAGCCAAGCGATTAAAGAGCTTCGTAGGGTGAACAAAGGTATGATTATTGATGATAAAATGTTGTGGCATATAAGTAACGTCGAGACATGGGTGAGTACTGCTTTAACAGATGCTAGCTATTGTGTTCAATCGTTTCCTGGTCATAGGATGAGTAAGAGGACTGCTACTATTAAGGTTAAGGCACAGAATGTTGCTGAGGTTACTAGTAATGGACTTGCTTTGTTTCATAGATATGCTGCTAAATATAGAGCAGCAGCAGCTGCTAGAGCTGCCAAGAAATTACCATAA 714 0.4048 MAQLNLTIMVIFLSIFSCLARKEPSLARHNSQTIQNKTQTQTQTQTRTKTMEYIESSCQGTRYPDLCIRSLASFAKYSSINGPDHLAHIALSVSLVKALQTRGYLLKIVKEIEEINNGSQPGYVYLTMQDCEKQISDSVDQLSQAIKELRRVNKGMIIDDKMLWHISNVETWVSTALTDASYCVQSFPGHRMSKRTATIKVKAQNVAEVTSNGLALFHRYAAKYRAAAAARAAKKLP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01170 237 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 52 219 IPR035513 -
Vivi6g01170 237 SMART PMEI_2 49 216 IPR006501 GO:0004857
Vivi6g01170 237 NCBIfam pectinesterase inhibitor domain 44 219 IPR006501 GO:0004857
Vivi6g01170 237 CDD PMEI-like_3 56 218 - -
Vivi6g01170 237 Coils Coil 128 148 - -
Vivi6g01170 237 Gene3D Invertase/pectin methylesterase inhibitor family protein 48 220 IPR035513 -
Vivi6g01170 237 FunFam Pectinesterase inhibitor 3 49 221 - -
Vivi6g01170 237 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 216 - -
Vivi6g01170 237 Pfam Plant invertase/pectin methylesterase inhibitor 53 216 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01170 Vivi-Chr6 38937238 38938240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01170 49 217 Carbohydrate Esterase AT3G49220 25.581 1.77e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01170 - - tpra:123890145 355.91