Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01165 ATGTTTCCTCTCTTATTCCTACTCCTAAAACTACAAATCTTCCTCACACATGCATCTCAATCTCTTCCCATTAACACTGAACTCAACACTCTTATTGCTATCAAACACTCTCTAGACCCAGAAAACCGTGTGTTGTTCTCATGGAACAGTTCTTCTGACCCATGTAATGGTGCTTTTGAAGGTGTGGCTTGTAATGAACAAGGTTTTGTTACTAATATATCACTTCAAGGGAAGGGTTTATCAGGAAATATACCTTCGGCTATTGGTGGTCTTAAGAGTTTGACTGGTCTTTACCTTCATTTCAATGCTTTGAATGGGATTTTGCCTAGGGAAATTGCAGGCTTATCTCAGCTTAGTGATTTGTATCTTAATGTTAATAGTCTCTCTGGTACTATCCCTCGTGAGATTGGTAACATGTCAAATCTTCAAGTTTTGCAGCTTTCTTATAACGAGCTTAATGGAAGTATACCGACCGAGCTAGGAGGACTAGATAAGCTAAGTGTTCTTTCACTCCAATATAATCACTTACGCGGCGCGATTCCTGCAACATTGGGTGAGCTAGAGTCACTAGAAAGATTGGATCTCAGCTTCAATACCCTTTTTGGTCCAATTCCAGTAACATTGTCTTATGCACCTAAACTACAGACTCTCGATGTTCGAAACAATTCACTCTCCGGAAACATCCCTCTAGATTTGAAAAGACTAGAAGAAGGGTTCAAGTATTCAAACAATCCTGGTTTATGTGGAATTGGATTTGCCAACTTAGATTCTTGTCAAATAGTATACAGTTCAGATCCAGTTAGACCTGAACCATATGTACCTACAAAGAATTCTACAATTGATCATCCGACATCGCCTGAACAAACGGCTAAAAACTGCAGCAATGCTGATTGTAGAAGGCGCTCCGAATCTTTGATAATTGCTTTGATTTTTGTGATGATTGGTGTTATTTTTGTTTCTTCTGTTATTGGGCTTTTTCTGATCTTACGATACCGCCGTCAGAAACAGAAAATTGGAAACACTGTTGAGATTTCTAGTAGCCGGCGGCTTAGTACTGATAAGATCAAGGAAGTGTGCAGGAAAGACGCGTCACGGCTTATCAGTTTGGAGTATTCCAACGGATGGGACCCGTTATCCAAAGATCTCGGTGGTTACTCCCAGGAGTTTCTCCGAAGCTTTATGTTTAATCTCGAAGAAGTAGACCGTGCAACTCAATGTTTCTCCGAGCTGAATATATTGTCGAAGAACAATATTTCGGCTAACTATAGAGGAATCTTGAGAGATGGATCTGTTGTGGTTATAAAGTGCATTGCCAAGACAAGCTGCAAGTCTGATGAAACTGAGTTCTTGAAAGGCTTGAAGATATTAACTTCGTTAAAACACAATAATCTTGTTCGTTTGAGAGGCTTTTGTTGTTCGAAAGGCCGCGGGGAATGTTTTCTGGTTTACGATTTTGTTTCGAACGGGAGTTTGTCGAAGTATCTGGATGTTAAGAGAGGAAGTGCTGAGGTACTTGAATGGTCCACTAGAGTTTCAATAATCCATGGTATTGCCAAAGGTATTGGTTATCTACATGGAAAAAACGGAAGGAAGCAATGTTCTCTTGTTCATCAGAATATATCAGCCGAAAAAGTACTTCTCGATTCCCGGTATAATTCCTTACTTGCAGATTCAGGATTGCACAAACTTCTTGCAGATGATGTTGTTTTCTCCACCCTCAAAGCTAGTGCTGCAATGGGGTACCTGGCACCAGAGTACGCGACAACGGGTCGTTTTACCGAAAAGAGTGATGTGTACGCTTTCGGGGTGATAGTTTTTCAACTTCTCATTGGAAAACATGATATCACCCTATTAAGTCGCCAATGGGAAGAAACTGGCTGTTTGAAAGATATTATTGATGAAAATCTTGAAGGAAAGTTTTTAGAATTCGAGGCAGAGAAATTGGCGAGACTAGCCTCGGTTTGCACCAATGAATCTCCGGATCTCCGGCCGACTATGGAGGATATAATGATAGAACTGAGTGATAAGTGGTAA 2034 0.4051 MFPLLFLLLKLQIFLTHASQSLPINTELNTLIAIKHSLDPENRVLFSWNSSSDPCNGAFEGVACNEQGFVTNISLQGKGLSGNIPSAIGGLKSLTGLYLHFNALNGILPREIAGLSQLSDLYLNVNSLSGTIPREIGNMSNLQVLQLSYNELNGSIPTELGGLDKLSVLSLQYNHLRGAIPATLGELESLERLDLSFNTLFGPIPVTLSYAPKLQTLDVRNNSLSGNIPLDLKRLEEGFKYSNNPGLCGIGFANLDSCQIVYSSDPVRPEPYVPTKNSTIDHPTSPEQTAKNCSNADCRRRSESLIIALIFVMIGVIFVSSVIGLFLILRYRRQKQKIGNTVEISSSRRLSTDKIKEVCRKDASRLISLEYSNGWDPLSKDLGGYSQEFLRSFMFNLEEVDRATQCFSELNILSKNNISANYRGILRDGSVVVIKCIAKTSCKSDETEFLKGLKILTSLKHNNLVRLRGFCCSKGRGECFLVYDFVSNGSLSKYLDVKRGSAEVLEWSTRVSIIHGIAKGIGYLHGKNGRKQCSLVHQNISAEKVLLDSRYNSLLADSGLHKLLADDVVFSTLKASAAMGYLAPEYATTGRFTEKSDVYAFGVIVFQLLIGKHDITLLSRQWEETGCLKDIIDENLEGKFLEFEAEKLARLASVCTNESPDLRPTMEDIMIELSDKW 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01165 677 SMART LRR_typ_2 139 163 IPR003591 -
Vivi6g01165 677 SMART LRR_typ_2 187 211 IPR003591 -
Vivi6g01165 677 SMART LRR_typ_2 91 114 IPR003591 -
Vivi6g01165 677 SMART LRR_typ_2 115 138 IPR003591 -
Vivi6g01165 677 Gene3D Transferase(Phosphotransferase) domain 1 487 676 - -
Vivi6g01165 677 SUPERFAMILY L domain-like 26 249 - -
Vivi6g01165 677 Pfam Protein tyrosine and serine/threonine kinase 430 672 IPR001245 GO:0004672|GO:0006468
Vivi6g01165 677 Pfam Leucine rich repeat 71 128 IPR001611 GO:0005515
Vivi6g01165 677 Pfam Leucine rich repeat 165 224 IPR001611 GO:0005515
Vivi6g01165 677 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Vivi6g01165 677 ProSiteProfiles Protein kinase domain profile. 407 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01165 677 Gene3D Ribonuclease Inhibitor 141 258 IPR032675 -
Vivi6g01165 677 Gene3D Phosphorylase Kinase; domain 1 384 485 - -
Vivi6g01165 677 FunFam Protein NSP-INTERACTING KINASE 2 24 173 - -
Vivi6g01165 677 SUPERFAMILY Protein kinase-like (PK-like) 387 670 IPR011009 -
Vivi6g01165 677 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 73 674 - -
Vivi6g01165 677 FunFam Protein NSP-INTERACTING KINASE 2 378 485 - -
Vivi6g01165 677 Gene3D Ribonuclease Inhibitor 26 139 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01165 Vivi-Chr6 38550031 38553307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01165 7 520 Miscellaneous Gene Families AT4G22730 50.474 5.02e-168 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Vivi6g01165 PK_Tyr_Ser-Thr 4.3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01165 - - vvo:131626249 1303.5