Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01153 ATGTTAGCTGCTTGTATTGGTATGGAGGAAAATGCAAAGCTTGTAAAAAATGGATCAAATTCTCTTGGGGGTTCTACCAATAAGGAAAGGGATGGTAGCTATGATGAAGATGAAGATGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCAGTTCTGGCCTCTCTGCCCCCATCAATGCAACTGGATCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGGCAAAAGTATCAGAAAGTCAAGAAGGATCCTTCAAAGTTCTCCGAGCTTCAAATACAATCTTACCTTAAAACTGTAGCTTTCCGTCGCGAAATAAATGAAGTTCAGAAAGCTGCCGTCGGAGGAGGAGTAGGCGGGATACAGACTTCACGGATTGCATCTGAAGCGAACCGAGAGTACATATTCTCGTCATCCTTTTCCGGTGACAAACAAGGACTTACCTCGTCCAGATTAGAGAGAAATGTTGAAGATACACAGCAAATGGAACGGGGAACACATCCTTCACAGAATTTTGTAAATAACATAGCAGCAGGAACTGTTTCTAATATTTCTGCTGGATTGGTTTGCGGTGAACCTAGCGAGCCTGTTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGAGTTCGAGTTAGTAGATCAAGAGCTATGGGGATGCGCATGACCCGTGACATTCAAAGGAATTTGGATTTGATGAAAGAGATTGAGCATGACAAAACACATGCAAACAAGGTTGATAACATTGACACAATGCCGAATACAGAAAATGTTCCATCAAAATCTTCTGGGAAGCAGCTTAGTGGTAAAACAAGAGAAGTGGATTTTGACTTAGTTGGAGATAATGTGCAAAATGAGGAATTAATGCTTGGTAAGAATACTTCTATAGAGATATCCTTTGAGTATGATTGCAAGGATGAATTTGCAAGTGGCGGGGATGATATATTTGCAAGTTTAGTTGGAGGAATATCTATGGAACACTCTCATGCTGATGATACTGTGGTGAAAACACCTTGTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTTCAAGGCCAGAATACCATTTCTCCCGGATATAATAAAGTGGAATTGAAATCTTCTGTTACAGGTGAGTATAATAACAATGAAAGTGAAGAAGAATGGGAAGAAGGGGATTGTAATGGTACTAGCACCTTATTTTGTCCATCTGAGCCGGAAAAGTTGGCATCAAAGGGGCTGTTGGAAGAGGAGTCTGATTTGCAGGAAGCAATTAGGAGAAGTCTCGAGAGTACACGGGATGAAAAACTTAAATGCGTGTCATCTTTAGATGAACATTCAAGTGCTTATGAGAAGAAATTGGATCCTAATTTAGAACATGGTGATAACAATGAAGCTGTAGCAGACAAAAATGAAAACTACATGACTAGAAATGACCCAGAATCTTTGCATCAGTTAGAGTCATCTGTGACATTTAAATCCAAAAACTCAGATACATTGATTAACAAACCTAGCGATACATTGATTAACGAACCTAGCAAACTGGATGGACATGATAATTCTGAAAATTCAATTTCAGATGGAAATGTCATGATGATGGACGAGGTTCCAAATCTTATTGTTGCAGAGGAATTATTGGATAAACATAATGACGGTGATGTGTCCAAGGTTGATCCACTTGATGTGACTGAAGAGGAGAAAAAGAAAAATAATAATAATTCTAAAGCATTAAGCAATTCTTCTGACAATACAAAGGCTGCTATTCTTTCGATGGAGCCATCCTTGAAAGGAGCTAAAGAAGACCTTGATCAGGAGTTAAAATTGCCTTCAGTGAACAATGATGGAAATCTGTCTATGGAAAGGACTAGTAACCTCTCCCAAGAATCAGTGATTTCCCCAGGAGATTTTCCTGTACAATTGGATGAGGTTCAATTGAATGAAGAAATGGAAATTCTTGATAGGGAATATATGAACCTAGAAAAGGAGCAGAGGAAGTTTGAGCGTAATGCAGAGTCCGTTGACAGTGAATTATTCACTGAATGCCAGGAACTACTGCAAATGTTTGGCTTGCCATATATCATTGCCCCTATGGAAGCTGAGGCACAATGTGCTTATTTAGAGCTATCAAAACTGGTTGATGGTGTCGTGACTGACGACTCTGATGTCCTTTTATTTGGGGCTCGCAGTGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGCAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAACTGCATTCCCGGAGGAAGACGGGTTCCAGAAATTCCGGCAGTGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGGTTGGATGCCAAATCTGTATCTAAGAAAGGGTCAAAACCTGAAGAAAAGGAGTCACCTGATCACATCCAAGAAACAAAGCAAATTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCAGAAGTTGACAAGTCAACTGAGCCTTTTGCATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTGTTACCTGTTTTAAAGCAGTACAACAAACATGCGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAATGAAAAATTTGCAAAAATTCGTAGCAAGAGAATCAATAAAGCTCTAAAGGGAATAACTAGTAAGCCACCTTCAGAGGGAACAGATGAAGAGGAAGGTCTTGCAGATAGGAAGAAATCAAAAACAAAAGAGTTGTTGGAAAGAAAAAAGGACGGGGATATTGTTGCTAAGAAACATACAAGGAAAAAGAAAATCAATGGTGTTTCTTCTTCTGCACCTGGTGCATCCAAGGTTGAAAAGTTACAGCCATGTATGCAAACAGAAGAAGAGCAACATGATGGTAAGGAATTGGCTCGGAATAAAAGTGGTAGCCGGCGAGGAAGAGGTAGAGGTGTGGGAGTAAAAAGAAGCAGAGAAAATAAAGGTCGTTGTTTTCAATCTGAAGCTGAAACATCATCTAGTAGTAGTGATGATGAGAATCATGATCCGGTTGTCAAAGTTGATGGGTCAACAGTTACAGAAGCTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGTCAACTATTCCTTTGAGGACCTTGAAGTTGAAGATGCAGTTGATTCATTTGATCAGAACAATCAGACTTGCTTGCGGGAAGAGGGACTGCAAGAAAAATCATCTTGCATTGCTGATGCACGTGTAGATAGTTTCAACAGAGTGATTGAAAGCAATATGATAGAAATCCCTATGGAGGATAACTTACCTGCAAACTCTCTGGAGCCAGAAACAGATGCTGGTGCAGCAACACCAAATACCCGCCCTTCAGACGACTATCTTGAAATGGGAGGTGGATTCTGTGCAGACGATAGTGAAATGGATAACAACCATGATGCAGTTGATGACATGAACACGGCTACAACAATATCTCCACACTGTTCTGACTTTTTGGCTGAAACTGACCGTGATAAAAGTAGTTCAGATATATTGTTTTCTGGTGCTGAAAAGGTTACAAGCGAGACACAAGTTGGAGAGACATGTCACAAGTTAGACACAGTGCCAAACGACCACCTAAATGCTGGCACAAGGGTCTTGACAACAGAGAATGCTCATCAAAATAGTGAGAGCTCTGAGGTAGCTTTTAGCGCTATGCCTTTTTTGAGGAAAAAAAGAAAGCGATGA 3894 0.406 MLAACIGMEENAKLVKNGSNSLGGSTNKERDGSYDEDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQSYLKTVAFRREINEVQKAAVGGGVGGIQTSRIASEANREYIFSSSFSGDKQGLTSSRLERNVEDTQQMERGTHPSQNFVNNIAAGTVSNISAGLVCGEPSEPVDESIETYLDERGRVRVSRSRAMGMRMTRDIQRNLDLMKEIEHDKTHANKVDNIDTMPNTENVPSKSSGKQLSGKTREVDFDLVGDNVQNEELMLGKNTSIEISFEYDCKDEFASGGDDIFASLVGGISMEHSHADDTVVKTPCGSDSDCDWEEGIVQGQNTISPGYNKVELKSSVTGEYNNNESEEEWEEGDCNGTSTLFCPSEPEKLASKGLLEEESDLQEAIRRSLESTRDEKLKCVSSLDEHSSAYEKKLDPNLEHGDNNEAVADKNENYMTRNDPESLHQLESSVTFKSKNSDTLINKPSDTLINEPSKLDGHDNSENSISDGNVMMMDEVPNLIVAEELLDKHNDGDVSKVDPLDVTEEEKKKNNNNSKALSNSSDNTKAAILSMEPSLKGAKEDLDQELKLPSVNNDGNLSMERTSNLSQESVISPGDFPVQLDEVQLNEEMEILDREYMNLEKEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVTAFPEEDGFQKFRQWVESPDPTILGRLDAKSVSKKGSKPEEKESPDHIQETKQIFMDKHRNVSKNWHIPSSFPSETVISAYLSPEVDKSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHATQLRLEAFYSFNEKFAKIRSKRINKALKGITSKPPSEGTDEEEGLADRKKSKTKELLERKKDGDIVAKKHTRKKKINGVSSSAPGASKVEKLQPCMQTEEEQHDGKELARNKSGSRRGRGRGVGVKRSRENKGRCFQSEAETSSSSSDDENHDPVVKVDGSTVTEAVRRSKRSRKPVNYSFEDLEVEDAVDSFDQNNQTCLREEGLQEKSSCIADARVDSFNRVIESNMIEIPMEDNLPANSLEPETDAGAATPNTRPSDDYLEMGGGFCADDSEMDNNHDAVDDMNTATTISPHCSDFLAETDRDKSSSDILFSGAEKVTSETQVGETCHKLDTVPNDHLNAGTRVLTTENAHQNSESSEVAFSAMPFLRKKRKR 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01153 1297 Gene3D - 756 844 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 491 529 - -
Vivi6g01153 1297 SMART xpgineu 687 756 IPR006086 GO:0004518
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 1273 1297 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 956 986 - -
Vivi6g01153 1297 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 707 727 IPR006084 -
Vivi6g01153 1297 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 761 776 IPR006084 -
Vivi6g01153 1297 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 686 703 IPR006084 -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 491 510 - -
Vivi6g01153 1297 Gene3D - 624 755 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 252 275 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 1015 1035 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 379 399 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 819 835 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 551 573 - -
Vivi6g01153 1297 SUPERFAMILY PIN domain-like 659 771 IPR029060 -
Vivi6g01153 1297 Pfam XPG I-region 690 771 IPR006086 GO:0004518
Vivi6g01153 1297 ProSitePatterns XPG protein signature 2. 690 704 IPR019974 GO:0016788
Vivi6g01153 1297 CDD H3TH_XPG 759 876 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 253 273 - -
Vivi6g01153 1297 FunFam DNA repair protein UVH3 756 813 - -
Vivi6g01153 1297 Coils Coil 643 677 - -
Vivi6g01153 1297 FunFam DNA repair protein UVH3 636 755 - -
Vivi6g01153 1297 CDD PIN_XPG_RAD2 662 915 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 1157 1182 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 441 465 - -
Vivi6g01153 1297 PRINTS Xeroderma pigmentosum group G protein signature 80 105 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vivi6g01153 1297 PRINTS Xeroderma pigmentosum group G protein signature 912 932 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vivi6g01153 1297 SMART HhH_4 758 791 IPR008918 GO:0003677|GO:0003824
Vivi6g01153 1297 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 756 939 IPR036279 -
Vivi6g01153 1297 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 1138 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 16 38 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 551 586 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 948 1098 - -
Vivi6g01153 1297 MobiDBLite consensus disorder prediction 816 835 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01153 Vivi-Chr6 38166097 38174942 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01153 666 808 Core DNA Replication Machinery Family AT5G26680 30.675 1.34e-13 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01153 K10846 - gmx:100820295 1437.17