Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01152 ATGGGAGTTCACGGTCTCTGGGAACTTCTCTCCCCCGTGGGTCGCCGTGTCTCCGTCGAGACCCTCGCTGGCAAAACCCTAGCCATCGACGCCAGCATATGGATGGTACAGTTTATCAAAGCGATGCGTGACGAGAAAGGTGAAATGGTTCGCAACGCTCATTTGCTTGGATTCTTCCGTCGCATTTGTAAGCTATTGTTCCTAAGGACTAGGCCTGTCTTCGTCTTTGACGGTGGAACGCCTGCCCTGAAGCGCAGGACCGTCATTGCTCGCCGGAGACAGCGCGATGTTTCACAAGCTAAAGTCCGCAAGACTGCCGAGAAATTGCTTCTCAATCACTTAAAGGCATTGAGGTTGAAGGAACTGGCTGATGATATTAAGAACCAGAAACTGAAGCAAAAGAGTGGCACAAAGTCTCAGGAAAAATCTAATCAGATGGACTTTATTGGCAATGATTTAGGAAAAAGTCACAAGAAAGAGCTGGATGAAATGCCTGCAGCTATGTCTCTGGCCAAGGAGGACAGAAATCTATTGCAGACTAAAATTTCGACAAGGTGCAACCAAGAGGAGCTTGATGAAATGTTGGCAGCATCTATAGCTGCAGAGGAAAATGAAATACGATCCAAAGAAGGAGGGACATCTACTGTAATTAATTCTTTAGATACAGACGAAGAGACGTTACTGCCTACAGCCAATGATGAAGTTGATTTAGCTGTTTTAGCTGCTTTGCCACACTCAATGCAACTTGATATTCTTGCACAGCTTAAAGGCAAGAAAACAGGACTGAAGCAAGTTGACAACCAGATAAGACATGAGGCCAGTGACTGTGGCAAGGGTAAAGGGATTGCTTTTAATGAAACTGACCTGGTTGGGTGTAGCTCAAGATGTGACGTCAATGCGACATCCAGCAGTGACAACCAAAATAGAATTGATGAAATGTTAGCTGCTTGTATTGGTATGGAGGAAAATGCAAAGCTTGTAAAAAATGGATCAAATTCTCTTGGGGGTTCTACCAATAAGGAAAGGGATGGTAGCTATGATGAAGATGAAGATGAAGAGATGATACTGCCAGCTATGCACAGTGAAGTTGATCCAGCAGTTCTGGCCTCTCTGCCCCCATCAATGCAACTGGATCTCCTTGTTCAGATGAGAGAGCGATTGATGGCAGAGAACAGGCAAAAGTATCAGAAAGTCAAGAAGGATCCTTCAAAGTTCTCCGAGCTTCAAATACAATCTTACCTTAAAACTGTAGCTTTCCGTCGCGAAATAAATGAAGTTCAGAAAGCTGCCGTCGGAGGAGGAGTAGGCGGGATACAGACTTCACGGATTGCATCTGAAGCGAACCGAGAGTACATATTCTCGTCATCCTTTTCCGGTGACAAACAAGGACTTACCTCGTCCAGATTAGAGAGAAATGTTGAAGATACACAGCAAATGGAACGGGGAACACATCCTTCACAGAATTTTGTAAATAACATAGCAGCAGGAACTGTTTCTAATATTTCTGCTGGATTGGTTTGCGGTGAACCTAGCGAGCCTGTTGATGAAAGTATTGAGACATATCTAGATGAGAGGGGTCGAGTTCGAGTTAGTAGATCAAGAGCTATGGGGATGCGCATGACCCGTGACATTCAAAGGAATTTGGATTTGATGAAAGAGATTGAGCATGACAAAACACATGCAAACAAGGTTGATAACATTGACACAATGCCGAATACAGAAAATGTTCCATCAAAATCTTCTGGGAAGCAGCTTAGTGGTAAAACAAGAGAAGTGGATTTTGACTTAGTTGGAGATAATGTGCAAAATGAGGAATTAATGCTTGGTAAGAATACTTCTATAGAGATATCCTTTGAGTATGATTGCAAGGATGAATTTGCAAGTGGCGGGGATGATATATTTGCAAGTTTAGTTGGAGGAATATCTATGGAACACTCTCATGCTGATGATACTGTGGTGAAAACACCTTGTGGTTCTGATTCAGATTGTGATTGGGAAGAAGGAATTGTTCAAGGCCAGAATACCATTTCTCCCGGATATAATAAAGTGGAATTGAAATCTTCTGTTACAGGTGAGTATAATAACAATGAAAGTGAAGAAGAATGGGAAGAAGGGGATTGTAATGGTACTAGCACCTTATTTTGTCCATCTGAGCCGGAAAAGTTGGCATCAAAGGGGCTGTTGGAAGAGGAGTCTGATTTGCAGGAAGCAATTAGGAGAAGTCTCGAGAGTACACGGGATGAAAAACTTAAATGCGTGTCATCTTTAGATGAACATTCAAGTGCTTATGAGAAGAAATTGGATCCTAATTTAGAACATGGTGATAACAATGAAGCTGTAGCAGACAAAAATGAAAACTACATGACTAGAAATGACCCAGAATCTTTGCATCAGTTAGAGTCATCTGTGACATTTAAATCCAAAAACTCAGATACATTGATTAACAAACCTAGCGATACATTGATTAACGAACCTAGCAAACTGGATGGACATGATAATTCTGAAAATTCAATTTCAGATGGAAATGTCATGATGATGGACGAGGTTCCAAATCTTATTGTTGCAGAGGAATTATTGGATAAACATAATGACGGTGATGTGTCCAAGGTTGATCCACTTGATGTGACTGAAGAGGAGAAAAAGAAAAATAATAATAATTCTAAAGCATTAAGCAATTCTTCTGACAATACAAAGGCTGCTATTCTTTCGATGGAGCCATCCTTGAAAGGAGCTAAAGAAGACCTTGATCAGGAGTTAAAATTGCCTTCAGTGAACAATGATGGAAATCTGTCTATGGAAAGGACTAGTAACCTCTCCCAAGAATCAGTGATTTCCCCAGGAGATTTTCCTGTACAATTGGATGAGGTTCAATTGAATGAAGAAATGGAAATTCTTGATAGGGAATATATGAACCTAGAAAAGGAGCAGAGGAAGTTTGAGCGTAATGCAGAGTCCGTTGACAGTGAATTATTCACTGAATGCCAGGAACTACTGCAAATGTTTGGCTTGCCATATATCATTGCCCCTATGGAAGCTGAGGCACAATGTGCTTATTTAGAGCTATCAAAACTGGTTGATGGTGTCGTGACTGACGACTCTGATGTCCTTTTATTTGGGGCTCGCAGTGTTTACAAGAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGCAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATTCGCATGGCACTACTTCTTGGGAGTGACTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAATGCTATTGAGGTTGTAACTGCATTCCCGGAGGAAGACGGGTTCCAGAAATTCCGGCAGTGGGTTGAGTCACCGGATCCCACCATCCTTGGAAGGTTGGATGCCAAATCTGTATCTAAGAAAGGGTCAAAACCTGAAGAAAAGGAGTCACCTGATCACATCCAAGAAACAAAGCAAATTTTCATGGATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTTATCTCCAGAAGTTGACAAGTCAACTGAGCCTTTTGCATGGGGAAAGCCAGATCAGCTTGTTCTTCGCAAAATGTGCTGGGAGAAATTTGGGTGGTCTAGCCAGAAAGCAGATGAATTGCTGTTACCTGTTTTAAAGCAGTACAACAAACATGCGACTCAACTGCGGTTGGAGGCATTTTACAGTTTCAATGAAAAATTTGCAAAAATTCGTAGCAAGAGAATCAATAAAGCTCTAAAGGGAATAACTAGTAAGCCACCTTCAGAGGGAACAGATGAAGAGGAAGGTCTTGCAGATAGGAAGAAATCAAAAACAAAAGAGTTGTTGGAAAGAAAAAAGGACGGGGATATTGTTGCTAAGAAACATACAAGGAAAAAGAAAATCAATGGTGTTTCTTCTTCTGCACCTGGTGCATCCAAGGTTGAAAAGTTACAGCCATGTATGCAAACAGAAGAAGAGCAACATGATGGTAAGGAATTGGCTCGGAATAAAAGTGGTAGCCGGCGAGGAAGAGGTAGAGGTGTGGGAGTAAAAAGAAGCAGAGAAAATAAAGGTCGTTGTTTTCAATCTGAAGCTGAAACATCATCTAGTAGTAGTGATGATGAGAATCATGATCCGGTTGTCAAAGTTGATGGGTCAACAGTTACAGAAGCTGTGCGAAGGTCAAAGCGATCTCGGAAACCTGTCAACTATTCCTTTGAGGACCTTGAAGTTGAAGATGCAGTTGATTCATTTGATCAGAACAATCAGACTTGCTTGCGGGAAGAGGGACTGCAAGAAAAATCATCTTGCATTGCTGATGCACGTGTAGATAGTTTCAACAGAGTGATTGAAAGCAATATGATAGAAATCCCTATGGAGGATAACTTACCTGCAAACTCTCTGGAGCCAGAAACAGATGCTGGTGCAGCAACACCAAATACCCGCCCTTCAGACGACTATCTTGAAATGGGAGGTGGATTCTGTGCAGACGATAGTGAAATGGATAACAACCATGATGCAGTTGATGACATGAACACGGCTACAACAATATCTCCACACTGTTCTGACTTTTTGGCTGAAACTGACCGTGATAAAAGTAGTTCAGATATATTGTTTTCTGGTGCTGAAAAGGTTACAAGCGAGACACAAGTTGGAGAGACATGTCACAAGTTAGACACAGTGCCAAACGACCACCTAAATGCTGGCACAAGGGTCTTGACAACAGAGAATGCTCATCAAAATAGTGAGAGCTCTGAGGTAGCTTTTAGCGCTATGCCTTTTTTGAGGAAAAAAAGAAAGCGATGA 4830 0.4159 MGVHGLWELLSPVGRRVSVETLAGKTLAIDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTRPVFVFDGGTPALKRRTVIARRRQRDVSQAKVRKTAEKLLLNHLKALRLKELADDIKNQKLKQKSGTKSQEKSNQMDFIGNDLGKSHKKELDEMPAAMSLAKEDRNLLQTKISTRCNQEELDEMLAASIAAEENEIRSKEGGTSTVINSLDTDEETLLPTANDEVDLAVLAALPHSMQLDILAQLKGKKTGLKQVDNQIRHEASDCGKGKGIAFNETDLVGCSSRCDVNATSSSDNQNRIDEMLAACIGMEENAKLVKNGSNSLGGSTNKERDGSYDEDEDEEMILPAMHSEVDPAVLASLPPSMQLDLLVQMRERLMAENRQKYQKVKKDPSKFSELQIQSYLKTVAFRREINEVQKAAVGGGVGGIQTSRIASEANREYIFSSSFSGDKQGLTSSRLERNVEDTQQMERGTHPSQNFVNNIAAGTVSNISAGLVCGEPSEPVDESIETYLDERGRVRVSRSRAMGMRMTRDIQRNLDLMKEIEHDKTHANKVDNIDTMPNTENVPSKSSGKQLSGKTREVDFDLVGDNVQNEELMLGKNTSIEISFEYDCKDEFASGGDDIFASLVGGISMEHSHADDTVVKTPCGSDSDCDWEEGIVQGQNTISPGYNKVELKSSVTGEYNNNESEEEWEEGDCNGTSTLFCPSEPEKLASKGLLEEESDLQEAIRRSLESTRDEKLKCVSSLDEHSSAYEKKLDPNLEHGDNNEAVADKNENYMTRNDPESLHQLESSVTFKSKNSDTLINKPSDTLINEPSKLDGHDNSENSISDGNVMMMDEVPNLIVAEELLDKHNDGDVSKVDPLDVTEEEKKKNNNNSKALSNSSDNTKAAILSMEPSLKGAKEDLDQELKLPSVNNDGNLSMERTSNLSQESVISPGDFPVQLDEVQLNEEMEILDREYMNLEKEQRKFERNAESVDSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELSKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMQDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVTAFPEEDGFQKFRQWVESPDPTILGRLDAKSVSKKGSKPEEKESPDHIQETKQIFMDKHRNVSKNWHIPSSFPSETVISAYLSPEVDKSTEPFAWGKPDQLVLRKMCWEKFGWSSQKADELLLPVLKQYNKHATQLRLEAFYSFNEKFAKIRSKRINKALKGITSKPPSEGTDEEEGLADRKKSKTKELLERKKDGDIVAKKHTRKKKINGVSSSAPGASKVEKLQPCMQTEEEQHDGKELARNKSGSRRGRGRGVGVKRSRENKGRCFQSEAETSSSSSDDENHDPVVKVDGSTVTEAVRRSKRSRKPVNYSFEDLEVEDAVDSFDQNNQTCLREEGLQEKSSCIADARVDSFNRVIESNMIEIPMEDNLPANSLEPETDAGAATPNTRPSDDYLEMGGGFCADDSEMDNNHDAVDDMNTATTISPHCSDFLAETDRDKSSSDILFSGAEKVTSETQVGETCHKLDTVPNDHLNAGTRVLTTENAHQNSESSEVAFSAMPFLRKKRKR 1609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01152 1609 Gene3D - 1 150 - -
Vivi6g01152 1609 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 256 - -
Vivi6g01152 1609 FunFam DNA repair protein UVH3 1068 1125 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1131 1147 - -
Vivi6g01152 1609 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vivi6g01152 1609 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vivi6g01152 1609 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 691 713 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 863 898 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 565 585 - -
Vivi6g01152 1609 SMART xpgn3 1 98 IPR006085 GO:0004518
Vivi6g01152 1609 FunFam DNA repair protein UVH3 948 1067 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 753 778 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1469 1494 - -
Vivi6g01152 1609 CDD PIN_XPG_RAD2 974 1227 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1268 1298 - -
Vivi6g01152 1609 ProSitePatterns XPG protein signature 2. 1002 1016 IPR019974 GO:0016788
Vivi6g01152 1609 Pfam XPG I-region 1002 1083 IPR006086 GO:0004518
Vivi6g01152 1609 SMART xpgineu 999 1068 IPR006086 GO:0004518
Vivi6g01152 1609 Pfam XPG N-terminal domain 1 95 IPR006085 GO:0004518
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1327 1347 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 564 587 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 130 149 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 863 885 - -
Vivi6g01152 1609 SUPERFAMILY PIN domain-like 2 1083 IPR029060 -
Vivi6g01152 1609 Gene3D - 937 1067 - -
Vivi6g01152 1609 CDD H3TH_XPG 1071 1188 - -
Vivi6g01152 1609 CDD PIN_XPG_RAD2 2 111 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1260 1410 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1128 1147 - -
Vivi6g01152 1609 FunFam DNA repair protein UVH3 1 146 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 328 349 - -
Vivi6g01152 1609 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1068 1251 IPR036279 -
Vivi6g01152 1609 Coils Coil 955 989 - -
Vivi6g01152 1609 Pfam Ubiquitin binding region 361 388 IPR025527 -
Vivi6g01152 1609 Pfam Ubiquitin binding region 230 254 IPR025527 -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 803 822 - -
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 1585 1609 - -
Vivi6g01152 1609 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Vivi6g01152 1609 Gene3D - 1068 1156 - -
Vivi6g01152 1609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Vivi6g01152 1609 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vivi6g01152 1609 SMART HhH_4 1070 1103 IPR008918 GO:0003677|GO:0003824
Vivi6g01152 1609 MobiDBLite consensus disorder prediction 803 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01152 Vivi-Chr6 38166097 38177488 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01152 1 95 Core DNA Replication Machinery Family AT5G26680 34.286 1.25e-09 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01152 K10846 - gmx:100820295 1873.98