Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01146 ATGGGTCGTGCTAAAATAACGATGAAATTCATCCAAAATCAAAAAGCTCGAAAATTAGCTTTCATTCGGAGACACAATGGATTAACCAAAAAAGTTTCTGAGTTTTCTAAACAATTTGGAGTTGAAGCTTGTTTAGTTGTGTGTGATGGCGATGACGCTAGATCGATAACTTGGCCACAAGACTCAACAATTGTATACTCAGTGCTTAAAAAGTATGAGCAACAAAAGATTGAGACAACTCCTAAGAAGTTTGATGTGATTGACTATTTTGCGGTTAGGAAAAACATGGTTGAAGTTGAGATTTCCAAAATGCACAAAAAGATTGTGATGAACAAGTATCCAACATGGAGTCCATGCTTCCATACAATAGATGGAGAGCAACTTAAAGGCTTCGTTGATATTGTAGATGCAAAGATTCAAGCTTGTAATCACAAAATTAGCATGCTAAAAAATATGCAACAAAGTAATAAAAATAGTTTTATGCAAAACCTAGCTCAACAAAATGTTGCCTCCTCGCACTCTAGTCAACTTGATCTTACGCATAGCATTCCACAAATTCAACATATCTCTAGTGATCCTATAGAGATTGTTAATGATAATATTAGTGAGGCAAAGGAGTTCACTAATTGTGTTAGGTTGCCTCTTGTTTCATTGACAAATCAAACAAGTAAACCTACAAAGTTAGATAATATGATGGTTGAACCTCTTCAAGAACGTGCTAATCAACTTGAGGAATTTCCGCAGTTAGATGATTTGATGCTTAAACCTGAGAATCGTATTTCTAACCTTGCAAGTTTTGAAGAATGGGCTAATCAACTAGATGATTATCTTGTGAATTGGAATAGTCAACCTGATTTATCTACCTGGCAAGATATTTCATTTATATCCTAG 891 0.3479 MGRAKITMKFIQNQKARKLAFIRRHNGLTKKVSEFSKQFGVEACLVVCDGDDARSITWPQDSTIVYSVLKKYEQQKIETTPKKFDVIDYFAVRKNMVEVEISKMHKKIVMNKYPTWSPCFHTIDGEQLKGFVDIVDAKIQACNHKISMLKNMQQSNKNSFMQNLAQQNVASSHSSQLDLTHSIPQIQHISSDPIEIVNDNISEAKEFTNCVRLPLVSLTNQTSKPTKLDNMMVEPLQERANQLEEFPQLDDLMLKPENRISNLASFEEWANQLDDYLVNWNSQPDLSTWQDISFIS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01146 296 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Vivi6g01146 296 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Vivi6g01146 296 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Vivi6g01146 296 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 49 IPR002100 GO:0003677|GO:0046983
Vivi6g01146 296 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01146 Vivi-Chr6 37760748 37761638 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01146 6 192 Type I MADS-box Gene Family AT5G58890 27.692 2.76e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi6g01146 SRF-TF 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01146 - - vvo:131639524 446.432