Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01127 ATGCCTCCAAAGAAGAAGCAGCAGCGAGAAGAAAAACCTGAAAACCCTAAAACCCTTCCAAAGAAGAAGACCAACAACACTTCATCAGTATCTTCTACTTCTTCATCTACTAAGAAACCCATTCCACAACCTTCCAAGTACGGTATTCAACACTTCTTCGATCGCCACACAATCCAACACTCTCAGAAACAGCAAGCTGTCAACTCAACCTCTCAGGTTGATTCCGTTTCTCTCCCACCGCCGGAGAAACCCGACAATGGGAAGGCTACGTCAGGTCCATCTTCACAGAATGTTACTCCCGATGATCCCACTGAGGTGTCTCCGGAGATGTCGAAGTCCATGTCACGCAAGCGGTTCAAATTCTCACCTGGAATGTTTATCAAGCAAAGTCAGGATGATGGGGCTGATGAGGTTACATGGAAGATATCTCCAGTGAATGAAAGGCTTCAAGCAGTTTCAAAATACACTCCTAAGATGATTCAAGCATTGGCTGATTCTTCGAGGACAAGCATGTTGCAAATTCGCCACTGTTCAGAAGATAAGACTTCTCTGAACAAAGGCAGCAAGGTCGAAGAGTTGCTTATTACGCCAACTCCTACTGCATCTGCAAAAGCTCCGTTGTCATTAAGTAAATTAGGCCTGAAAAAGTTAAACCGTGACCGTGATGTGGGAGTTAATGGAAATCCAACTACTTTGACCAACTCTTCTGGAGTGGCTGGTGAAAGAAATCCCTTCAGAACTCCACCTTCTATGTCTTGTCGCCTAGATAAGCTTGCCAAGGATGTTGAGCACATTGGACCATCTGACCAGCCTTTTTTGAGGCAGCACAAAAAGGCATTGCTTGAACTTTTAGATCAAGTTGAAGATGCAATTGGTGTTGATAGTGATACAATTTGTGATGAAACCACTCATTCCTTTAAATCACAAGATGGCATTGCGAACAAGCTCCCTGTCAGAGTCAACCATCTAGTTGAAAGAACTGAATCACTTATACCTAAAGAGGCTATTGGTGATTTCTCCAATTCTAATTATTTGGTTTTGGAGGCATCTGAAAATTTGCAACTTGCTGGTTCATCTGCTGCTGAAGGTCCATACAAGGTGCTTCGTTTACTAAATGAACAAACTGGAGAAGAGCGAGCTGTAAACTTGTGGGATGAATGGTCTTACAGTGTAATTGCACCTGGAGATACTGTGAACGTAATTGGTCAATTTGATGAAGGGGGAAACTGTGACATTAATCATGATAATAATTTTTTGATTGTACATCCAGATATTCTTGTGTCTGGAACACGGGTTGCTGCCAGTTTTAGTTGCCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAAAATAATGAGTACTCATTAGCAGCTTTATGTGGAACCTTGCTTCACCAAATATTTCAGGCTGGGCTTACAAATGACAATCCTACAATAAACTTTTTGGAATGTTACACAGAAGTGGTTTTAAAAAAAAATGTTGAAAGTTTATTTGCATGTGGAGTAAATGAAGAGGATGTTCGCAAAACCATGATTGATGGTATCCCTAGAATATACAATTGGATTATGCTGTTCAGAAATATGGAGGAAAGAGAAGACCCTAATGTTAATTTTGGATGTGCTAATGGAATGAAGAATGTTGGCATATCTGAGGTAATTGATATTGAAGAAATGGTATGGGCACCAAAATATGGTTTGAAAGGGATGATTGATGCTTCACTTAGAGTGACGGTTCAATCTAGAAAAGATAAACCAGAGGAGAAGATCATGCCATTAGAGTTTAAAACTGGAAAATCACCCAGTAGCCAGACATCCGTAGAACATAATGCCCAAGTGATTTTGTATACTCTCCTGATGTCTGAAAGGTACCAGAAGACCATTGATTCTGGCCTTCTGTATTATCTCCAAACAGATCAGACACAGGGCATTACAGTTCAAAGATCCGACTTAGTTGGGTTAATAATACGGCGTAATGAGCTAGCAAGTGATATTCTCAAGGCATTAGTCTTGCAGCAACTTCCACCAGTGTTACAGAGTCCTAGCATGTGCAGAGGTTGTCGCCATCTTAATGCCTGTAGCATTTATCATAAGGCGCATGGTGGAAGCATCGAGAGCAATGGATTGGGAGACATTTTCGATTCCATTACTAATCACTTGACTTCATCTCATTTTAAGTTCCTCCGCCATTGGGACCATTTGATTGACTTAGAAGCTAAAGGGACTGAGTTTTTAAAGAAAGACGTGTGGCGATCATATAATTTGAGGACTTGCAGTGCCGGTGGTGTTTCTTCTATTGTTATTGATGCTTCACAAGGAATACCTTATTCAAAATCTCACGAAGATAATCGTTTCATTTATCGTTTTGTACCGCAAGATACTTCTTGCCCCTCTATAGTTTTTGATGATGATCCTTCTAGTGCCTCATTGAAAATTGATTTAGATTTCACACTGAGAAGTGGTGACTTTGTGATATTGAGTAACGAGTCAAGCCATCAAACTATTGCAAGAGGAGTGATTTCAGATACCAGCAAGAATCATATTTCTGTTTCCTTTTCCAAGCTTTTGAGAATTCCTGGAAGGTCTTCCACAGAACATGAGCTCCTTAAGCAGGTTTGGCGAATTGACAAAGATGAAGCTGTGACCTTGTTTGCAATTATGAGGTTTAATCTAGTACAACTTTTTTTACAAAATGATCAAAGTACTCATCTTCGGAGGATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGTTCTATAGTTAGCCAGGATCCTGCAATATCTTACGTTTGGTCTGAGCAGAGTTTGAATGATGATCAACGTAGAGCTATTCTCAAGATACTTGTGGCAAAGGATTATGCACTTATCCTAGGGATGCCTGGAACAGGGAAGACATCCACCATGGTCCATGCTGTGAAAGCTTTGTTGATTAGAGGCACATCCATTTTACTGACAGCCTATACAAATTCTGCTGTTGATAATTTACTAATCAAATTAAAAGCACAGGGCATTGATTTTGTTCGGATTGGAAGGCATGAAGCAGTGAATGAAGAGGTCAGAGGGCACTGCCTCTCAGAAACAAATGTACAGAGTGTTGAAGATATCAAAATAAGATTAGAACAAGTCAAAGTTGTTGCAGTTACATGTTTGGGCATTTCCAGTCCCCTGCTTGCCAACAAGAGATTTGATGTATGCATTATGGATGAAGCCGGGCAGACAACTCTGCCGGTGTCCTTGGGCCCTCTAAGATTTGCTTCAATGTTTGTTCTTGTGGGGGATCATTATCAACTGCCACCTCTTGTCCAGAGTACAGAGGCCCGAGAGAATGGCATGGGGATGAGTTTGTTTTGTAGGCTTTCAGAAGCTCATCCACAGGCAATTTCAGCTCTGCAGAGTCAGTATCGTATGTGTCAGGGTATTATGGACTTGTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCATCTGAAATAGCTAATGCCAAACTTGAGTTTTCTGGCTTAAGCTGCTGTTTGCCTTGGCTGGAAGATGTTTTGACTCCCGGAAGGCCAGTGATATTTATTGATACTGATATGTTGCCTGCCTTAGAGGAAAGAGATCAGAAAATTGTAAATAACCCTATTGAAGCTCACATAATCGCCGAGGTTGCAAAGGAATTGGTAAAAAATGGAATTGGAGGAGAGCACATTGGCATTATTACTCCCTATAACTCACAGGCAAACCTCATCCGGCATGCTACTTGCATAACATCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAAGACTGTATATTAGTATCTTTTGTACGGTCCAGTAAGAACCCAACAAGCTGCGTGGCTTCTCTTCTCGGAGACTGGCACAGGATAAATGTCGCCCTTACTCGTGCCAAGAGAAAGTTGATCATGGTGGGGTCTCGCAAAACTCTAACGAAGGTTCCACTTCTGAAGCTTCTCATTAAGAAAGTTGAAGAGCAATCTGGAATTTTAACTTTGTCTAAGAACGATGTCTATAGAAAAGGGGAGCTTATCAGATGTTCTCAAATTGCTTGTTCAAAACAAACATTAGATGTTCACAATTGA 4095 0.4107 MPPKKKQQREEKPENPKTLPKKKTNNTSSVSSTSSSTKKPIPQPSKYGIQHFFDRHTIQHSQKQQAVNSTSQVDSVSLPPPEKPDNGKATSGPSSQNVTPDDPTEVSPEMSKSMSRKRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKYTPKMIQALADSSRTSMLQIRHCSEDKTSLNKGSKVEELLITPTPTASAKAPLSLSKLGLKKLNRDRDVGVNGNPTTLTNSSGVAGERNPFRTPPSMSCRLDKLAKDVEHIGPSDQPFLRQHKKALLELLDQVEDAIGVDSDTICDETTHSFKSQDGIANKLPVRVNHLVERTESLIPKEAIGDFSNSNYLVLEASENLQLAGSSAAEGPYKVLRLLNEQTGEERAVNLWDEWSYSVIAPGDTVNVIGQFDEGGNCDINHDNNFLIVHPDILVSGTRVAASFSCPRRTVLDERLKNNEYSLAALCGTLLHQIFQAGLTNDNPTINFLECYTEVVLKKNVESLFACGVNEEDVRKTMIDGIPRIYNWIMLFRNMEEREDPNVNFGCANGMKNVGISEVIDIEEMVWAPKYGLKGMIDASLRVTVQSRKDKPEEKIMPLEFKTGKSPSSQTSVEHNAQVILYTLLMSERYQKTIDSGLLYYLQTDQTQGITVQRSDLVGLIIRRNELASDILKALVLQQLPPVLQSPSMCRGCRHLNACSIYHKAHGGSIESNGLGDIFDSITNHLTSSHFKFLRHWDHLIDLEAKGTEFLKKDVWRSYNLRTCSAGGVSSIVIDASQGIPYSKSHEDNRFIYRFVPQDTSCPSIVFDDDPSSASLKIDLDFTLRSGDFVILSNESSHQTIARGVISDTSKNHISVSFSKLLRIPGRSSTEHELLKQVWRIDKDEAVTLFAIMRFNLVQLFLQNDQSTHLRRMIVDLEAPRFDSGSIVSQDPAISYVWSEQSLNDDQRRAILKILVAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVNEEVRGHCLSETNVQSVEDIKIRLEQVKVVAVTCLGISSPLLANKRFDVCIMDEAGQTTLPVSLGPLRFASMFVLVGDHYQLPPLVQSTEARENGMGMSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLRCGSSEIANAKLEFSGLSCCLPWLEDVLTPGRPVIFIDTDMLPALEERDQKIVNNPIEAHIIAEVAKELVKNGIGGEHIGIITPYNSQANLIRHATCITSLEIHTIDKYQGRDKDCILVSFVRSSKNPTSCVASLLGDWHRINVALTRAKRKLIMVGSRKTLTKVPLLKLLIKKVEEQSGILTLSKNDVYRKGELIRCSQIACSKQTLDVHN 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01127 1364 CDD DEXXQc_DNA2 934 1134 IPR026851 GO:0017116
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 220 250 - -
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 20 43 - -
Vivi6g01127 1364 Gene3D - 865 1132 IPR027417 -
Vivi6g01127 1364 Pfam DNA replication factor Dna2 373 574 IPR014808 -
Vivi6g01127 1364 PANTHER DNA2/NAM7 HELICASE FAMILY 99 1329 IPR045055 -
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 1 19 - -
Vivi6g01127 1364 Pfam AAA domain 1037 1102 IPR041677 GO:0004386
Vivi6g01127 1364 Pfam AAA domain 935 1026 IPR041677 GO:0004386
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 1 117 - -
Vivi6g01127 1364 Pfam AAA domain 1111 1311 IPR041679 -
Vivi6g01127 1364 CDD SF1_C_Upf1 1135 1328 IPR047187 -
Vivi6g01127 1364 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 877 1026 - -
Vivi6g01127 1364 Pfam Domain of unknown function DUF83 584 692 IPR022765 -
Vivi6g01127 1364 CDD DNA2_N-like 428 663 - -
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 88 110 - -
Vivi6g01127 1364 FunFam DNA replication helicase Dna2 536 692 - -
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 59 77 - -
Vivi6g01127 1364 FunFam DNA replication helicase 1133 1346 - -
Vivi6g01127 1364 Gene3D - 1133 1346 IPR027417 -
Vivi6g01127 1364 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 1031 1132 - -
Vivi6g01127 1364 Gene3D - 428 692 IPR011604 -
Vivi6g01127 1364 MobiDBLite consensus disorder prediction 224 241 - -
Vivi6g01127 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 934 1319 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01127 Vivi-Chr6 36742724 36758845 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01127 19 1076 Core DNA Replication Machinery Family AT1G08840 54.402 0.0 1092
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01127 K10742 - gmx:100799415 1807.34