Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01123 ATGCATAGAATAATATCCACGCCGGCGTCTAAATTCCGCCAATTCCGGCGACTCCGCTCCGGACACACTACCATCACCGCGGCGAGCGACGAGGAACAAGCTTCACATATCTTATTATGGCGGTACCAGATCTTGGATCCAGACAGCGAGTTTGTTGCCTATTGGAACAAGGTTTTCCTCGTCACCAGTCTTCTCGCGCTTTTCATCGATCCTCTTTACTTCTTCCTCCCGACCGTTGGTGGCCCTGCTTGCTTGACGGCGGACCCCAAGCTCAGCATCTTCCTCACTGTTCTTCGCTCGTTTGCCGATCTCTTTTATGTTCTGCATATGGTTATGAAGTTTCGGACTGCGTTTGTTGCTCCTAATTCGAGAATCGTCGGTCGCGGTGACCTTGTTATGGATCCCAGACAAATTGCAATGCGGTATTTGAAGTCTGATTTTGTCATTGACCTTGCTGCTACCATTCCACTGCCTCAGATCGTTATTTGGTTAGTGATTCCAGCTAGTAGCGGCAAAAAGAGTGATCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAATACGTTCCTAGGCTCTTTCTCATCTTTCCTTTGAACCAGCGTATTCAAAAAACAAATGGTGTTATAGCAAAGACTGCCTGGATCGGTGCTGCATACAATCTTATTCTCTACATGCTAGCTAGCCATGTTACAGGAGCAACTTGGTACCTATCATCAATAGGAAGGCAGTTCAATTGCTGGAAAACGCAATGTGAACTGGAAAATCGGTCGCATTCCCTTTCTTGTTTGCCTAGTTTTCTTGACTGTAATAGTTTGAATCTCCCGGAAAGACAGTACTGGCTAAATATCACTCGTGTTATTGCCAAGTGTGATGCAAAGAGCAAGATCAACATCAAATACAAGTTTGGGATGTTTGCAGATGCTTTCCTCAATGATGTTGTCACTACTAGTTTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTACGAAATTTAAGTTCTTATGGACAAAATTTGGACACCACCACATACCTTTTAGAGACACTATTTTGCATCGTCTTATGCATTGCTGGATTGGTTCTCTTCTCACTTTTGATTGGAAACATGCAAACATACTTGCAATCGATGACAGCTAGATTAGACGAATGGAGGATTCGGAAAAGGGATACAGAGGAATGGATGAGGCATCGACAGCTACCTCAAAATTTGCAGGAACGCGTTCGTCGTTTCGTTCAGTATAAATGGTTAGCTACGAGAGGAGTAGATGAAGAGGCCATACTGCTTTCCTTACCTTTGGATCTCCGCCGCGAAATCCAACATCACCTGTGTCTCTCTCTAGTGCGACGAGTGCCATTCTTCTCACAAATGGATGATCAACTACTTGATGCAATCTGCGAACGCCTTGTATCATCATTAAGCACGCAGGGAACGTATATATTTCAAGAGGATGATCCAGTAGATGAAATGTTGTTTATCATTAGAGGGACATTGGAGAGTTCGACAACCAACGGAGGAAGGTATGGGTTCTTCAATTCAATCACACTAAGGCCAGGAGACTTTTGTGGAGAAGAATTGTTAACATGGGCTTTGTTACCAACCTCAACTCTCAATTTACCTGCTTCAACTCGAACTGTAAAAGCTATTACCGAAGTAGAAGCTTTTGCGCTACAAGCAGAGGATCTAAAATTCGTGGCAAGTCAGTTCAAACGTCTTCACAGCAAGAAACTTCAGCATGCTTTTAGGTATTATTCGCAGCAATGGAGAACATGGAGTTCGTGTTTCATACAAGCGGCATGGAGAAAGCATCAGAAAAGAAAGGCAACAAGAGAGTTGTCAATTAAGGAAGGCATTTACTACATGGCGGATCCTGAGATTGAGGAATCATCAGGGCATGGCAAAAATTTTAATAATCTTGGTGCTACTGTTTTGGCTTCAAGATTTAAAGCAAATGCGAAGAAAGGGAATAGTAAGATTAGTGATCCAGTGCCGCAGTTGTTTAAACCTCATGAACCTGATTTCTCTCGAGATCACGATGTTTAG 2046 0.4316 MHRIISTPASKFRQFRRLRSGHTTITAASDEEQASHILLWRYQILDPDSEFVAYWNKVFLVTSLLALFIDPLYFFLPTVGGPACLTADPKLSIFLTVLRSFADLFYVLHMVMKFRTAFVAPNSRIVGRGDLVMDPRQIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASSGKKSDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTNGVIAKTAWIGAAYNLILYMLASHVTGATWYLSSIGRQFNCWKTQCELENRSHSLSCLPSFLDCNSLNLPERQYWLNITRVIAKCDAKSKINIKYKFGMFADAFLNDVVTTSFKERYFYCLWWGLRNLSSYGQNLDTTTYLLETLFCIVLCIAGLVLFSLLIGNMQTYLQSMTARLDEWRIRKRDTEEWMRHRQLPQNLQERVRRFVQYKWLATRGVDEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIFQEDDPVDEMLFIIRGTLESSTTNGGRYGFFNSITLRPGDFCGEELLTWALLPTSTLNLPASTRTVKAITEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSQQWRTWSSCFIQAAWRKHQKRKATRELSIKEGIYYMADPEIEESSGHGKNFNNLGATVLASRFKANAKKGNSKISDPVPQLFKPHEPDFSRDHDV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01123 681 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Vivi6g01123 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 29 675 - -
Vivi6g01123 681 Gene3D Jelly Rolls 452 572 IPR014710 -
Vivi6g01123 681 MobiDBLite consensus disorder prediction 655 681 - -
Vivi6g01123 681 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi6g01123 681 Pfam Cyclic nucleotide-binding domain 477 565 IPR000595 -
Vivi6g01123 681 SUPERFAMILY cAMP-binding domain-like 385 579 IPR018490 -
Vivi6g01123 681 CDD CAP_ED 454 585 IPR000595 -
Vivi6g01123 681 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Vivi6g01123 681 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
Vivi6g01123 681 SMART cnmp_10 454 585 IPR000595 -
Vivi6g01123 681 Gene3D Helix hairpin bin 378 445 - -
Vivi6g01123 681 Gene3D - 59 377 - -
Vivi6g01123 681 FunFam Cyclic nucleotide-gated ion channel 1 381 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01123 Vivi-Chr6 36626606 36629864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01123 28 680 Ion Channels AT5G14870 66.569 0.0 950
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01123 K05391 - gmx:100802812 1199.5