Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01117 ATGGACAAAAAAGAGTGCAGTTCTTCACAAGATCCTGATGTTCGAAAGGGACCTTGGACAATGGAAGAAGACTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAACTCCTTGGCAAAATCTGCTGGTCTTAAACGTACCGGAAAGAGTTGCAGACTTCGGTGGCTAAATTATCTTCGACCCGATGTTAGACGAGGGAATATTACGCCCGAGGAACAACTCTTGATCATAGAACTACATGCAAAATGGGGAAACAGGTGGTCGAAAATCGCGAAACATCTACCGGGACGAACCGATAACGAGATAAAGAACTATTGGAGGACAAGGATTCAGAAGCATATCAAACAAGCTGATCAACAAAACTCTCAGCAGCAACAACAACAGAGTTCTTCAGATATTCAAATAAATGACAATAATGAAAATAATAACAATCAAGTAGCAAGCTCTAGCCAAATTCCCAACACAGCTGAACCTATGGACACCAGCAGCAATAATATTATGTCACCTCCTTCTTACCAAGGAATTTTGGAACCATTTTCATCTCATCAGTTTCCTACAATCTCTGATCAATCAAGTTCTTGCACCAATGACAATAACTACTGGAGCATGGAAGATCTCTTGTCTTTGCAATTACTTAATGGAGATTAA 660 0.3985 MDKKECSSSQDPDVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIIELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQADQQNSQQQQQQSSSDIQINDNNENNNNQVASSSQIPNTAEPMDTSSNNIMSPPSYQGILEPFSSHQFPTISDQSSSCTNDNNYWSMEDLLSLQLLNGD 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01117 219 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vivi6g01117 219 SMART sant 68 116 IPR001005 -
Vivi6g01117 219 SMART sant 15 65 IPR001005 -
Vivi6g01117 219 MobiDBLite consensus disorder prediction 117 182 - -
Vivi6g01117 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vivi6g01117 219 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vivi6g01117 219 Gene3D - 16 68 - -
Vivi6g01117 219 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vivi6g01117 219 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Vivi6g01117 219 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 178 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vivi6g01117 219 CDD SANT 73 112 IPR001005 -
Vivi6g01117 219 Gene3D - 73 151 - -
Vivi6g01117 219 Coils Coil 111 131 - -
Vivi6g01117 219 CDD SANT 18 63 IPR001005 -
Vivi6g01117 219 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vivi6g01117 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vivi6g01117 219 MobiDBLite consensus disorder prediction 119 182 - -
Vivi6g01117 219 FunFam Myb-related protein 305 73 156 - -
Vivi6g01117 219 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01117 Vivi-Chr6 36390780 36395723 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01117 10 219 MYB Transcription Factor Family AT3G01530 54.460 3.70e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g01117 Myb_DNA-binding 6.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01117 K09422 - gmx:778046 321.242