Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01109 ATGGCATCTCCTCGGCCATGCGTTAAAGCTCCACAACAAAGGATTCTTGTTCAATTGGTGGATCAATTTGGAACTAGAGAATGGTCTCATATTGCTAAGTTTCTAAGTGGCAGGATCGGGAAACAATGTAGGGAAAGATGGAATAATCATCTTCGGCCCGATATTACGAAGGACTCATGGAGCCAGGAAGAGGACAAAATATTGATTGAAGCTCGTAAGAAACTTGGGAACAAATGGTCTGAAATTTCAAAGAAATTGCTCGGGCACACAGACAACACCATCAAGAACCACTGGAACGCCACCAAGCGCAGCCAAATCGCAAAGAAGAGGCGGAGCAAGCGTAAAAGTTTGAAGCTGAATGCACTTCAAAAGTACATCATTGAAGTCGAAGCCGCAAAGGAAGCTGAAAAGAAGCAGTTGGAGGATTCCATAAGCAGGATGAATATTGAAAATCAACTTAACTTCAACAATGCCAATGGAAGTTCGGGAGGTTTGGCTGCTCGTCCAGAAGGTGAAATTGAAGGCTATGTTCCAATGATGGTCAATAGTGGTGATGATGGAATGGGAAATGGATTTGGAGCAATGAATTGTGATTATGGATCATATGGAATGAAGTTTTTTCCTGAGGTTCCCATGAATCAAGAAATTGATCTCATGAAGATGTTCTGTAAAAATTCTTAG 681 0.417 MASPRPCVKAPQQRILVQLVDQFGTREWSHIAKFLSGRIGKQCRERWNNHLRPDITKDSWSQEEDKILIEARKKLGNKWSEISKKLLGHTDNTIKNHWNATKRSQIAKKRRSKRKSLKLNALQKYIIEVEAAKEAEKKQLEDSISRMNIENQLNFNNANGSSGGLAARPEGEIEGYVPMMVNSGDDGMGNGFGAMNCDYGSYGMKFFPEVPMNQEIDLMKMFCKNS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01109 226 SMART sant 4 53 IPR001005 -
Vivi6g01109 226 SMART sant 56 104 IPR001005 -
Vivi6g01109 226 CDD SANT 13 51 IPR001005 -
Vivi6g01109 226 FunFam Transcriptional activator Myb isoform A 9 57 - -
Vivi6g01109 226 Pfam Myb-like DNA-binding domain 13 66 - -
Vivi6g01109 226 SUPERFAMILY Homeodomain-like 31 107 IPR009057 -
Vivi6g01109 226 CDD SANT 59 102 IPR001005 -
Vivi6g01109 226 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Vivi6g01109 226 Gene3D - 10 56 - -
Vivi6g01109 226 ProSiteProfiles Myb-like domain profile. 12 51 IPR001005 -
Vivi6g01109 226 Coils Coil 130 150 - -
Vivi6g01109 226 PANTHER MYB PROTEIN-RELATED 13 128 - -
Vivi6g01109 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 51 IPR017930 -
Vivi6g01109 226 Gene3D - 59 101 - -
Vivi6g01109 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01109 Vivi-Chr6 35892636 35897483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01109 10 126 MYB Transcription Factor Family AT4G18770 60.684 1.91e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g01109 Myb_DNA-bind_6 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01109 K09422 - vvo:131613528 433.721