Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01108 ATGGAATCAGATCCTAGATTTGCAAGAAAATTTTCTTACTTTTCTAGGGATTTTCCTCAAAATCCTAGTGTAAAATCAGAGATCCCCACACTAGTTCCATTGCAACCAAGTTCAACTCTTTCTCCCTCACCATCACATTTCAACAGCTCCTTCCCTATGATCCCAACTCCATCGTACAAGAATGCATCAACCAATGTATTGCAGGAAAAGATATTCGACGGTAAGAATCCAATGACATTTGCACCAAATAGCAACAAAAGGGAAGTCATGCATGGCCGCCTTAACACTAGCAATGGAATTTGGGACTTATCAAAGAAAAATATCTTCCGACATGGTGAAACTTGTCAACATGGAGTGAGTTCATCGCTAGTTAACGATGCGAATCCATCTATCGCGTTTATGTCTGATTTTCAAGAAGATCCTTCATTCATTGGTGGAATTGGAAACAAATCCCCCGTCAATGACCGAGAAGTCGTTCTCAGCGACAAGAAGCAACGTAAGAGAGTTCACAAGAATGTTGAAACTCACCATAGAGATCTCAATATAACCAAAGGCCAATGGAGTGAAAATGAGGACAGGATTCTTGTTCAATTGGTGAATCAATTTGGAAGTAGAGAATGGTCTCAAATTGCAAAGTTTCTAAGTGGCAGGATCGGGAAACAATGTAGGGAAAGATGGAATAATCATCTTCGGCCCGATATTAAGAAGGACTCGTGGAGCCAAGAGGAGGATAAAATACTAATTGAAGCTCACAAGAAACTTGGGAACAAATGGTCTGAAATTTCAAAGAAATTGCCCGGGCGCACAGACAACACCATCAAGAACCACTGGAATGCCACCAAGCGTAGCCAAATTGCGAAGAAGAGGCAGAGCAAACGTAAAAGTTCGAAGCTAAATGCACTTCAAAAGTATATCATTGAAGTCGAAGCCGCAAAGGAAGCTGGAAAGAAGCGGTTGGAGGATTCCATTAGCAGGATGAATATTGAGAATCAACTTAACTTCAACAATGCCAACGGAAGTCCTGGAGGTTTGGCTGCTCGTCCAGAAGGTGAAATTGAAGGCTATGTTCCAATGATGGTCAATGGTGGTGATGATGGAATGGGAAATGGATTTGGAGCAATGAATTGTGATTATGGATCATATGCAATGGAGTTTTTTCCTGAGGTTCCTATGAATCAGGAAATTGATCTCATGAAGATGTTCTGTAAAAACTCTTAG 1218 0.4097 MESDPRFARKFSYFSRDFPQNPSVKSEIPTLVPLQPSSTLSPSPSHFNSSFPMIPTPSYKNASTNVLQEKIFDGKNPMTFAPNSNKREVMHGRLNTSNGIWDLSKKNIFRHGETCQHGVSSSLVNDANPSIAFMSDFQEDPSFIGGIGNKSPVNDREVVLSDKKQRKRVHKNVETHHRDLNITKGQWSENEDRILVQLVNQFGSREWSQIAKFLSGRIGKQCRERWNNHLRPDIKKDSWSQEEDKILIEAHKKLGNKWSEISKKLPGRTDNTIKNHWNATKRSQIAKKRQSKRKSSKLNALQKYIIEVEAAKEAGKKRLEDSISRMNIENQLNFNNANGSPGGLAARPEGEIEGYVPMMVNGGDDGMGNGFGAMNCDYGSYAMEFFPEVPMNQEIDLMKMFCKNS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01108 405 PANTHER MYB PROTEIN-RELATED 168 296 - -
Vivi6g01108 405 CDD SANT 238 281 IPR001005 -
Vivi6g01108 405 CDD SANT 187 230 IPR001005 -
Vivi6g01108 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 285 IPR017930 -
Vivi6g01108 405 ProSiteProfiles Myb-like domain profile. 231 281 IPR001005 -
Vivi6g01108 405 Pfam Myb-like DNA-binding domain 187 245 - -
Vivi6g01108 405 Gene3D - 183 235 - -
Vivi6g01108 405 SUPERFAMILY Homeodomain-like 181 277 IPR009057 -
Vivi6g01108 405 FunFam Transcriptional activator Myb isoform A 183 236 - -
Vivi6g01108 405 ProSiteProfiles Myb-like domain profile. 179 230 IPR001005 -
Vivi6g01108 405 SMART sant 183 232 IPR001005 -
Vivi6g01108 405 SMART sant 235 283 IPR001005 -
Vivi6g01108 405 Gene3D - 237 305 - -
Vivi6g01108 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 179 230 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01108 Vivi-Chr6 35845965 35848034 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01108 182 305 MYB Transcription Factor Family AT4G18770 63.710 1.02e-53 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi6g01108 Myb_DNA-bind_6 1.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01108 K09422 - psat:127129356 577.4