Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01102 ATGGTAGAAAATGGAGAACAAATTCGAAGTCCCGTAATCCGAAAGAAAGCGGCTTTGATGGAATCAAATAGCCAAAATATGGCTTCTTTTATCAGTCCTAGGTTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAAGCACTTATGCTTGCCGCTCTCATTGTTGAAGATACCCCGGATCGAGATTCCAAACAAAAGAAACGGCTTGTTTTGAATTCCAAATCGCCGCTATCCAATTCATCAAGGAAACGTAGAGCTTTGAGGAATCCACAACCGATTGTTCTTGATCTTGATGAAGATGAAACCCCCAAAAAAGATAGTGGGAAGAAGAAGAGAGAAAAGAAAATTTGTGTCGGCGAAGAAAGTAAAGTTGGAGAAAAGGAATTGACTAAGAAGGGATCTGATGTTAATTCTAATAGTTCTGGTCTTCCTTGTATGGATAAGCTAAGAGAGGAGCTTTCATGTGCAATTTGTTTGGAGATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCATAGCTTTTGTAGAAAATGTCTGAAATCTGCTGCAGACAAGTGTGGCAAAAAGTGTCCCAAATGCAGGCAATTGATAAGCAATGGACGATCGTGCACGGTGAACACGGTTCTCTGGAACACGATTCAACTTCTATTTCCTCAAGAAATTGAAGCAAGGAAAGTTGCTGCTGCTAGCGCCATAAATAATAGACAAGCTGTTCAGAATCCAATTCCAGAAAAAACATTCTATACTAGCACAAGGAATAGAAGTTTACAACCATATCCGTCCAGTAGGAGTATGAATTCAAGGAGAAACGAGGCGGCAACAACACAGGATGAAGAGGATGCTGCATTGGCTAGAAGGCTGCAAAGAGAAATTGATAGAGAAAACAACAACCGTAGAACTTCAACATTATCATCGATGGTTAGAGCGAGGTCAAGAAGAGGGGTTTCTAACCAAGATGAAGATGCTGCTTTTGCTCTAAGGTTGCAAAGAAATGAGTTTATGCAAGCTTTTAGAAGTAGCAGCCAGGAACCGTCATCTTCTTCTTCCTCCACATTATTAGCTGGACCAAATTTGAGGGCTATGGCAACTAGAGCCATGAATCTTCGTAATAGAGAGAGAAGGGTTTAA 1131 0.412 MVENGEQIRSPVIRKKAALMESNSQNMASFISPRFKSAAAMAGWDEEALMLAALIVEDTPDRDSKQKKRLVLNSKSPLSNSSRKRRALRNPQPIVLDLDEDETPKKDSGKKKREKKICVGEESKVGEKELTKKGSDVNSNSSGLPCMDKLREELSCAICLEICFEPSTTPCGHSFCRKCLKSAADKCGKKCPKCRQLISNGRSCTVNTVLWNTIQLLFPQEIEARKVAAASAINNRQAVQNPIPEKTFYTSTRNRSLQPYPSSRSMNSRRNEAATTQDEEDAALARRLQREIDRENNNRRTSTLSSMVRARSRRGVSNQDEDAAFALRLQRNEFMQAFRSSSQEPSSSSSSTLLAGPNLRAMATRAMNLRNRERRV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01102 376 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 299 313 - -
Vivi6g01102 376 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 IPR018957 GO:0046872
Vivi6g01102 376 MobiDBLite consensus disorder prediction 62 116 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 244 316 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 338 358 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 244 272 - -
Vivi6g01102 376 SUPERFAMILY RING/U-box 148 219 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 71 87 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 95 116 - -
Vivi6g01102 376 PANTHER UNCHARACTERIZED 319 368 - -
Vivi6g01102 376 SMART ring_2 156 194 IPR001841 -
Vivi6g01102 376 ProSitePatterns Zinc finger RING-type signature. 171 180 IPR017907 -
Vivi6g01102 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 225 IPR013083 -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 338 357 - -
Vivi6g01102 376 MobiDBLite consensus disorder prediction 273 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01102 Vivi-Chr6 35636602 35638719 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01102 70 250 C2H2 Transcription Factor Family AT5G39550 27.419 2.14e-07 50.8