Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01062 ATGAATCTCGATGGAGAGACGAATCTTAAACTAAAGCAAGCACTAGAAGGGACTTTGAATTTGTTAGAAGACTCGAGTTTTCGAGATTTCAAGGCTGTGATTCGATGCGAGGATCCGAATGCGAATTTGTATACTTTTGTAGGAAGTTTGGAGGCTGATGAGGAACATCAGTATCCACTTTCACCTCAGCAGTTACTTCTTAGAGACTCTAAGTTGAAGAACACTGATTTTATCTACGGTGTTGTGATTTTCACCGGGCACGATAAGAAGGTTATGCAGAATTCGACAGAGCCTCCTTCGAAGAGAAGTAAGATTGAGAAGAGAATGGATAAGGTTATCTACTGTTTGTTCTTTGTGCTGATTTTGGTTTCTTTCATCGGTTCGATTTTCTTCGGGATTTGGACGAAGCAGGATATTAAAAACGGAAGAATGAAGAGATGGTACCTTAGGCCTGATGATACTGAGGTTTACTATGATCCTGATAATGCAGTAGTTGCGGCGCTTCTTCATTTCTTGACAGCATTGATGTTGTATGGTTACGTTATTCCGATTTCGTTGTATGTTTCGATTGAAGTTGTGAAGGTTCTTCAAAGCGTTTTCATCAACCAGGATTTGAATATGTATTACGAGGAAACGGATAAGCCAGCGCACGCTCGTACGTCGAATTTGAACGAAGAACTTGGTCAAGTTGATACCATACTTTCTGATAAAACAGGAACATTGACTTGTAACTCTATGGAGTTTATCAAGTGTTCTATTGGTGGAGTTGCTTATGGAAAAGGATTTACGGAAGTCGAGAGAGCTTTATCAAAGAGAAAAGATTCGTATTTCGGCCGCAAGTTGAAAGAGGAAAACACTACTAAGGCTGTGAAATCGAAGTCGAAGATTAAAGGATTTAACTTCATGGATGAAAGGATCATGAATGGAAATTGGGTGAAACAGACTAATGCTAATGTGATACAGAATTTCCTAAAGGTTTTGGCTGTATGTCATACTGCAATACCTGAAGTTGATGAAGCAACCGGTAGCATTTCGTACGAAGCTGAATCGCCGGATGAGGCTGCTTTTGTTGTTGCAGCCAGCCAATTCGGATTCGAATTTTATGAAAGAACAAATGCAGCTATTTCAGTTCATGAATTGGACCTCGAATCAAATGTGAAATCAGAAAGGTCTTATAACCTTTTGAATGTATTAGAGTTTACGAGTGCACGAAAACGGATGTCCGTAATCGTAAGAGACCACACTGGGAAACTACTACTACTTAGCAAAGGTGCTGACAGTGTCATGTTTGAGCTACTTGGAAAGAATGGAAGAGAATTTGAAGAGCAAACTAAGTATCACATTAACGAATACGCCGATTCTGGTTTAAGGACATTGATACTCGCGTATCGTGAACTCGACGAGGCAGAGTACAATCAGTTTAATAAAGAGTTGACAGATGCGAAAAACTTAGTGAGCGCGGATCAGGAGCAGATTGTAGAGGATATATTGCAAAAGATTGAGAAGGATTTGATTCTTCTTGGTGCTACCGCAGTCGAGGATAAACTACAAGACAGGGTTCCTGAATGTATTGACAAACTAGCACAGGCTGGGATTAAGTTATGGGTTTTGACAGGTGATAAAATGGAAACGGCAATTAATATCGGTTTCAGATTCAATTCATTCAAATGGATGCTATGA 1680 0.3976 MNLDGETNLKLKQALEGTLNLLEDSSFRDFKAVIRCEDPNANLYTFVGSLEADEEHQYPLSPQQLLLRDSKLKNTDFIYGVVIFTGHDKKVMQNSTEPPSKRSKIEKRMDKVIYCLFFVLILVSFIGSIFFGIWTKQDIKNGRMKRWYLRPDDTEVYYDPDNAVVAALLHFLTALMLYGYVIPISLYVSIEVVKVLQSVFINQDLNMYYEETDKPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIGGVAYGKGFTEVERALSKRKDSYFGRKLKEENTTKAVKSKSKIKGFNFMDERIMNGNWVKQTNANVIQNFLKVLAVCHTAIPEVDEATGSISYEAESPDEAAFVVAASQFGFEFYERTNAAISVHELDLESNVKSERSYNLLNVLEFTSARKRMSVIVRDHTGKLLLLSKGADSVMFELLGKNGREFEEQTKYHINEYADSGLRTLILAYRELDEAEYNQFNKELTDAKNLVSADQEQIVEDILQKIEKDLILLGATAVEDKLQDRVPECIDKLAQAGIKLWVLTGDKMETAINIGFRFNSFKWML 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01062 559 NCBIfam phospholipid-translocating P-type ATPase 1 551 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vivi6g01062 559 Pfam Cation transport ATPase (P-type) 345 431 - -
Vivi6g01062 559 ProSitePatterns E1-E2 ATPases phosphorylation site. 236 242 IPR018303 -
Vivi6g01062 559 SUPERFAMILY HAD-like 500 555 IPR036412 -
Vivi6g01062 559 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 306 508 IPR023299 GO:0000166
Vivi6g01062 559 FunFam Phospholipid-transporting ATPase 349 507 - -
Vivi6g01062 559 Coils Coil 464 484 - -
Vivi6g01062 559 Gene3D - 275 514 IPR023299 GO:0000166
Vivi6g01062 559 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 552 - -
Vivi6g01062 559 SUPERFAMILY Calcium ATPase, transmembrane domain M 96 326 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01062 Vivi-Chr6 34148774 34154694 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01062 1 550 Primary Pumps ATPases AT1G68710 69.189 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01062 K01530 - vvo:131609096 1083.55