Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01050 ATGTGCAACAAGAATAGTATTACTGTTTCTCCAGCAAAGTGTAAGTCTGTTACTATGAAGAGGAAAAGGAAACCAACCTATAAAAACTCTTCTTCTTTTTCATCATCTTCTTCATCTTCTTCTCTTAAACCACACAAACGTAGAAACAGAACCAAAACAAGAAAACCTAAATATCTTAGTCTTCGTTTACAGCTCTCACAAACTCAAACAAACCAAACAGAAAAAACAACAACCCAACAGCAGCAACAGGAATCACAATTGAATCTCTTCTCTCACCACCAATCAGATTCCGACATGCAAGAAGAAAACAACGTGGCTCTACTCTTCACATCCGACGGTGGAGCGACGCTAAACGGTCTTCTGGAAGACGAATCGACAACGCTAACAGCGACGACGGCGGAGGAGGAAGAGTCGTTATCGGTGATGAGGTGTCCGGCGATGGATGGGTTGGTGAAGAAAGCGATGAGGAGGAAGAGAGACGATGAGGAGGAGAGATGGGTTAGTTACTCGGAAGTTGTGGAGGAGAAGAAGGAAATGATGGAGGAAGTGAATAGTTGTGTTGGGAGTGAAACGACGTCGTTTTTTGGGTCTTTGTCTTTGAAGCTGGATCATGATGGAATATTGAATGCTTGGTCTGATAAAGGATCTCTGTATGTTGATGCTGCTGATGAGCCTCCACAGACTGTTCCTGATTTGTTCAATGCTTCTACCATCATTCCCAATGTAATGTGGGATGGTTATGGGTGTGATGTTGTTGGGAACACATGGAAAGTTCCTGAAGGTTGTGGAGCTAACAATAACAATGTGAATGTGAAGGAAGAAATGAGTTGGAAGCTTGGTCAGAGAGAGGCAAGTTTGTTGAGATACAAAGAGAAAAGGCAAAGTAGACTCTTTGCTAAGAGGATTCGATATGAAGTTCGCAAGTTGAATGCTGAAAAACGGCCTAGAATGAAGGGACGATTTGTGAAGAGAGAATAA 978 0.4243 MCNKNSITVSPAKCKSVTMKRKRKPTYKNSSSFSSSSSSSSLKPHKRRNRTKTRKPKYLSLRLQLSQTQTNQTEKTTTQQQQQESQLNLFSHHQSDSDMQEENNVALLFTSDGGATLNGLLEDESTTLTATTAEEEESLSVMRCPAMDGLVKKAMRRKRDDEEERWVSYSEVVEEKKEMMEEVNSCVGSETTSFFGSLSLKLDHDGILNAWSDKGSLYVDAADEPPQTVPDLFNASTIIPNVMWDGYGCDVVGNTWKVPEGCGANNNNVNVKEEMSWKLGQREASLLRYKEKRQSRLFAKRIRYEVRKLNAEKRPRMKGRFVKRE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01050 325 MobiDBLite consensus disorder prediction 60 87 - -
Vivi6g01050 325 MobiDBLite consensus disorder prediction 43 57 - -
Vivi6g01050 325 Pfam CCT motif 282 324 IPR010402 GO:0005515
Vivi6g01050 325 ProSiteProfiles CCT domain profile. 282 324 IPR010402 GO:0005515
Vivi6g01050 325 MobiDBLite consensus disorder prediction 1 87 - -
Vivi6g01050 325 MobiDBLite consensus disorder prediction 28 42 - -
Vivi6g01050 325 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 14 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01050 Vivi-Chr6 33778857 33781352 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01050 197 324 C2C2-CO-like Transcription Factor Family AT1G73870 42.308 4.88e-21 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi6g01050 CCT 4.2e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01050 - - psat:127128050 505.753