LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi6g01021	ATGGAGTCACCTGTTGATGGAGTTGAATCTTTACCAGGAGTTCAGAATTCAGTTTCTGGAATAGATCACAATCCACCTTCGACGTCAGGGATCCTCCGTTCTTCTCGGCCGCCTTTACGAGTATCTAGAGATCAAGGGCCTTCTTCCAATCATCATAATCTAGGAAGGATGAATGATGCCTATCAAGAGGCTAACAATGTGGATCATGAAGGTTCGACTAAAATGGAGAAGCAATATTATAAGGTTAATGGTAAATCTGACCGTATCGAGAGTTTTGAAAGTTGTTTGGAAAAGAATATTTCCACAATTGAAACTAAATTGTGCATCAGTGAAAGTTCCATGAATCGTAAATCTGATGAGATATTAGAATCTGACAATGACGTATTAGTTTCGTCGAAACAAGTTGTTGATTTGAAAAACTCTGAGATTACGTTTTGCTCAAGTCCTCAGAATAGTTTGTATTCTGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAACACTGGGATCAACGAATGTGTTAGTGTCGATAAGTCAGTTGAAAGTGGAGAGGTTAGTAATTCATGTGAGAGCAGGAAGACGAGCATATGTAGAGGGAGTACCGGAAGTGATGTTAGTGACGAGAGCAGCATCAGTAGTTTGAGCAGTTCTTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCGATCCGAGTTCGGGATGGTGGATTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGCGGAGACATAGGGAGTGTATATCTAGCTGAGTTAAGCAGCACGAGGACTTGTTTTGCTATGAAAGTAATGAACAAGACAGAATTGTCGAGTCGCAAGAAGCTTCCGAGAGCGCAGACAGAGAGGGAGATCTTGCAGTCTCTAGATCATCCATTTCTACCGTCGTTGTACACGCACTTTGAGACAGAATCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGCGGGGATCTCCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCAGAGCATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATCATGCTATCAGATTTCGATCTCTCTCTAAGATGTGCCGTCAGTCCGACTCTGGTAAAGTCATCAAACACCAGCTTGGAGACTAAAAGCTCTGGATACTGCATTCAGCCCGCTTGCATTGAACCAACTTGTGTAATTCAGCCAGATTGCATCAAACCGTCATGCTTCACGCCACGTTTTCTATCAGGTAAATCCAAAAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACGCCACTCCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTTGTTGGCACACACGAGTACTTGGCGCCCGAAATCATCAAAGGCGAAGGTCACGGCAGTGCTGTAGACTGGTGGACATTTGGTATATTCTTATACGAGCTTTTGTTCGGTAGAACACCATTCAAAGGTTCAGCAAATCGAGCGACTTTATTTAACGTAGTTGGGCAGCCCTTAAGATTTCCTGAATCCCCTAGTGTTAGCTTTGCTGCTAGGGACTTGATTAGGGGTCTACTTGTGAAAGAGCCTCAGCATCGTCTTGCGTATAGACGTGGCGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCAACTCCTCCAGAAGTGCCGAGACAGGCCATGAAAGAAGCACTTATAGCTGAGAAGAAGGCGGCGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA	1902	0.4353	MESPVDGVESLPGVQNSVSGIDHNPPSTSGILRSSRPPLRVSRDQGPSSNHHNLGRMNDAYQEANNVDHEGSTKMEKQYYKVNGKSDRIESFESCLEKNISTIETKLCISESSMNRKSDEILESDNDVLVSSKQVVDLKNSEITFCSSPQNSLYSATVYSEAKESFTNTGINECVSVDKSVESGEVSNSCESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTRTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLETKSSGYCIQPACIEPTCVIQPDCIKPSCFTPRFLSGKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKEALIAEKKAAPGVKPSGNYLDIDFF	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi6g01021	633	SMART	serkin_6	248	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g01021	633	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	369	381	IPR008271	GO:0004672\|GO:0006468
	Vivi6g01021	633	ProSiteProfiles	Protein kinase domain profile.	248	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g01021	633	FunFam	serine/threonine-protein kinase D6PK-like	332	399	-	-
	Vivi6g01021	633	Gene3D	Phosphorylase Kinase; domain 1	248	327	-	-
	Vivi6g01021	633	CDD	STKc_phototropin_like	246	606	-	-
	Vivi6g01021	633	FunFam	Serine/threonine-protein kinase D6PK-like	246	331	-	-
	Vivi6g01021	633	Gene3D	Transferase(Phosphotransferase) domain 1	328	399	-	-
	Vivi6g01021	633	SUPERFAMILY	Protein kinase-like (PK-like)	222	605	IPR011009	-
	Vivi6g01021	633	Pfam	Protein kinase domain	249	402	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g01021	633	Pfam	Protein kinase domain	483	586	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi6g01021	633	FunFam	serine/threonine-protein kinase D6PK-like	481	604	-	-
	Vivi6g01021	633	MobiDBLite	consensus disorder prediction	1	56	-	-
	Vivi6g01021	633	MobiDBLite	consensus disorder prediction	10	56	-	-
	Vivi6g01021	633	Gene3D	Transferase(Phosphotransferase) domain 1	481	604	-	-
	Vivi6g01021	633	PANTHER	FLIPPASE KINASE 1-RELATED	87	609	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi6g01021	Vivi-Chr6	32318202	32322321	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi6g01021	191	633	AGC Kinase Gene Family	AT5G47750	75.930	0.0	697

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vivi6g01021		Pkinase	3.9e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi6g01021	K08286		-	gmx:100802402	973