Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01020 ATGAATGATGCCTATCAAGAGGCTAACAATGTGGATCATGAAGGTTCGACTAAAATGGAGAAGCAATATTATAAGGTTAATGGTAAATCTGACCGTATCGAGAGTTTTGAAAGTTGTTTGGAAAAGAATATTTCCACAATTGAAACTAAATTGTGCATCAGTGAAAGTTCCATGAATCGTAAATCTGATGAGATATTAGAATCTGACAATGACGTATTAGTTTCGTCGAAACAAGTTGTTGATTTGAAAAACTCTGAGATTACGTTTTGCTCAAGTCCTCAGAATAGTTTGTATTCTGCCACTGTCTATTCAGAAGCCAAAGAAAGTTTCACCAACACTGGGATCAACGAATGTGTTAGTGTCGATAAGTCAGTTGAAAGTGGAGAGGTTAGTAATTCATGTGAGAGCAGGAAGACGAGCATATGTAGAGGGAGTACCGGAAGTGATGTTAGTGACGAGAGCAGCATCAGTAGTTTGAGCAGTTCTTTGTATAAACCACATAAAGCAAATGATGTAAGATGGGAAGCAATTCAAGCGATCCGAGTTCGGGATGGTGGATTGGAAATGAGACATTTCAGGTTGTTGAAGAAATTGGGATGCGGAGACATAGGGAGTGTATATCTAGCTGAGTTAAGCAGCACGAGGACTTGTTTTGCTATGAAAGTAATGAACAAGACAGAATTGTCGAGTCGCAAGAAGCTTCCGAGAGCGCAGACAGAGAGGGAGATCTTGCAGTCTCTAGATCATCCATTTCTACCGTCGTTGTACACGCACTTTGAGACAGAATCATTCTCTTGCTTGGTTATGGAGTTTTGTCCTGGCGGGGATCTCCATGCACTCAGGCAAAGACAACCTGGGAAGTATTTTTCAGAGCATGCTGCAAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTAGAGTACTTGCACATGCTTGGGATCATCTACAGAGACCTCAAACCTGAGAATGTGTTGGTGAGAGAAGATGGTCACATCATGCTATCAGATTTCGATCTCTCTCTAAGATGTGCCGTCAGTCCGACTCTGGTAAAGTCATCAAACACCAGCTTGGAGACTAAAAGCTCTGGATACTGCATTCAGCCCGCTTGCATTGAACCAACTTGTGTAATTCAGCCAGATTGCATCAAACCGTCATGCTTCACGCCACGTTTTCTATCAGGTAAATCCAAAAAGAAAGAAAAGAAGTTGAAACCTAAGAATGACGTGCACAATCAGGTGACGCCACTCCCCGAGCTTATGGCCGAGCCCACAAATGCCCGATCAATGTCCTTTGTTGGCACACACGAGTACTTGGCGCCCGAAATCATCAAAGGCGAAGGTCACGGCAGTGCTGTAGACTGGTGGACATTTGGTATATTCTTATACGAGCTTTTGTTCGGTAGAACACCATTCAAAGGTTCAGCAAATCGAGCGACTTTATTTAACGTAGTTGGGCAGCCCTTAAGATTTCCTGAATCCCCTAGTGTTAGCTTTGCTGCTAGGGACTTGATTAGGGGTCTACTTGTGAAAGAGCCTCAGCATCGTCTTGCGTATAGACGTGGCGCTACAGAGATAAAACAACATCCATTCTTTCAAAATATTAACTGGGCGCTGATCCGTTGCGCAACTCCTCCAGAAGTGCCGAGACAGGCCATGAAAGAAGCACTTATAGCTGAGAAGAAGGCGGCGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 1734 0.4331 MNDAYQEANNVDHEGSTKMEKQYYKVNGKSDRIESFESCLEKNISTIETKLCISESSMNRKSDEILESDNDVLVSSKQVVDLKNSEITFCSSPQNSLYSATVYSEAKESFTNTGINECVSVDKSVESGEVSNSCESRKTSICRGSTGSDVSDESSISSLSSSLYKPHKANDVRWEAIQAIRVRDGGLEMRHFRLLKKLGCGDIGSVYLAELSSTRTCFAMKVMNKTELSSRKKLPRAQTEREILQSLDHPFLPSLYTHFETESFSCLVMEFCPGGDLHALRQRQPGKYFSEHAARFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLETKSSGYCIQPACIEPTCVIQPDCIKPSCFTPRFLSGKSKKKEKKLKPKNDVHNQVTPLPELMAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPSVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNINWALIRCATPPEVPRQAMKEALIAEKKAAPGVKPSGNYLDIDFF 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01020 577 PANTHER FLIPPASE KINASE 1-RELATED 58 553 - -
Vivi6g01020 577 SUPERFAMILY Protein kinase-like (PK-like) 166 549 IPR011009 -
Vivi6g01020 577 FunFam serine/threonine-protein kinase D6PK-like 425 548 - -
Vivi6g01020 577 Gene3D Transferase(Phosphotransferase) domain 1 276 344 - -
Vivi6g01020 577 Gene3D Phosphorylase Kinase; domain 1 190 275 - -
Vivi6g01020 577 SMART serkin_6 192 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01020 577 FunFam serine/threonine-protein kinase D6PK-like 276 343 - -
Vivi6g01020 577 FunFam Serine/threonine-protein kinase D6PK-like 190 275 - -
Vivi6g01020 577 Gene3D Transferase(Phosphotransferase) domain 1 424 548 - -
Vivi6g01020 577 ProSiteProfiles Protein kinase domain profile. 192 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01020 577 CDD STKc_phototropin_like 190 550 - -
Vivi6g01020 577 Pfam Protein kinase domain 427 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01020 577 Pfam Protein kinase domain 193 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01020 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01020 Vivi-Chr6 32318202 32322321 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01020 135 577 AGC Kinase Gene Family AT5G47750 75.930 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vivi6g01020 Pkinase 3.3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01020 K08286 - gmx:100802402 923.309