Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01018 ATGAGTTCCAAAAACAGCAACCCATCACATGTTTATTTTCTCTTGACAAGTATACTTTTCATCATGTCATGTTTATTTTCTCAATCACATTCAGACCCAAGAATCTCAGAAGCTGGACTCTACTGTGGACAAGACAAAGCACCACCTAAATCAAACTACATCCCAAGTTTCATACAAGAAATGGAGAATCTCTCACAGCTTGTAACAGATCACAATTGGGGAACTCATTCTGTCAATATATCAGGATCTCTTCCAATCTATGGCTTTGCACAATGTTTTAAAGACCTCTCTCATACCGATTGTCTTCTTTGTTATGCTGCAAGCCGCACTCGGCTCCCTCGTTGCCTTCCTTCGATCTCCGCCCGCATCTATCTTGACGGCTGCTTCCTTCGTTACGACAATTATAGTTTCTACTCAGAAGAAACTGACCCTTTGAGGGACACTGTTAACTGCACCTCCTCTGAGAGGTTGGAGGTGCAGATGGAGAAGAGTGTTGCAAGAGTGGTTGATGTTGTGGCCATGGATGCTGCTAGGAAAGGATTTTCCGTGGGAGAAGTTGACGGTGTTTATGCCTTAGCTCAATGCTGGAACTCACTTGGGAATAATGGGTGTAGAGATTGCTTGAAAAATGCTGCAAAGAAAGTAAGAGCGTGTTTGAGTTTGACAAATAATGAAGGTAGGGCCTTGAATGCTGGTTGTTATTTGAGATATTCAACGCGCAAGTTTTTCAACGAAGGAGGTGGAAAACATGGTGAAAAGAGATCTTTAAGAAGAGGAGATGTTATAGCAGCAGTGTTAGCAACAGTTGCAATTATTATGCTTGCTCTCTCTGCCTCTTTTGCAATCTTCAAAAAATTGTCGAATCTAAAAAAAGAAAAAAATAATCTGGATCAGGTTTCATCTTCTATAACAAAATCTAGTTTGAATTACAAATACGAAATGCTTGAGAAGGCGACAGATTATTTTAACTCTTCCAGGAAAATAGGCCAAGGAGGATCAGGTTCAGTTTTCAAAGGTATTCTTCCGAACGGAAACGTCGTTGCAGTAAAGAGATTGATATTCAATAATAGGCAATGGGTGGATGAGTTTTTCAATGAAGTAAATTTGATTAGTGGAACTGAACACAAGAACCTTGTGAAATTATTGGGTTGTAGCATTGAAGGGCCCGAGAGCCTACTTGTTTATGAGTACTTACCCAACAAGAGTTTAGATCAATTTCTCTTTGAAAAGAGCAGAACTCAAATTCTAAATTGGAAGCAGCGGTTTAACATCATTCAAGGAACAGCAGAAGGGCTCGCTTACCTTCATCAAGGTTCTAAAAAGAGAATCATCCATAGAGATATCAAGAGCAGCAATGTTCTTCTAGACGATAGCCTCTCTCCTAAGATTGCAGATTTCGGCCTTGCGCGCTGTTTCGCTGCTGATAAAACACATTTGAGTACTGGAATTGCTGGAACACTTGGTTACATGGCTCCAGAGTATCTGGTTCGAGGACAACTTACAGATAAAGCGGATGTATATAGTTTTGGAGTACTTGTTATGGAGATTATATGTGGCAGAAGGAATAATGTTATCAGAGAAGACTCTGGATCACTTCTACAAACGGTTTGGAAACGTTACCGATCAAACACATTAGTTGAGACTATTGATTGTAGCTTGGGAGATGATTTTCCTATAGCCGAGGCGTCAAGGGTGTTTCACATTGGTTTGCTTTGCACACAAGCTTCTGCTTCCCTTAGGCCATCCATGGCCCGTGTTGTTCAAATGTTAAGTAATTCAGATTTAGATGTTCCTACACCAAATCAACCACCATTTTTGAATGCTGCAATGCTAGACTCAGACAATTCCATTAGGTCTTGTAGTACAAACAGTTTTGTATCTAGTGCTTTAAAAGAGATCGGAGTTTCTTACAGCAACTCGGACGAGCCATCGGGAAGTGAAGAACCAAGTATCCAAACTTGA 1962 0.4047 MSSKNSNPSHVYFLLTSILFIMSCLFSQSHSDPRISEAGLYCGQDKAPPKSNYIPSFIQEMENLSQLVTDHNWGTHSVNISGSLPIYGFAQCFKDLSHTDCLLCYAASRTRLPRCLPSISARIYLDGCFLRYDNYSFYSEETDPLRDTVNCTSSERLEVQMEKSVARVVDVVAMDAARKGFSVGEVDGVYALAQCWNSLGNNGCRDCLKNAAKKVRACLSLTNNEGRALNAGCYLRYSTRKFFNEGGGKHGEKRSLRRGDVIAAVLATVAIIMLALSASFAIFKKLSNLKKEKNNLDQVSSSITKSSLNYKYEMLEKATDYFNSSRKIGQGGSGSVFKGILPNGNVVAVKRLIFNNRQWVDEFFNEVNLISGTEHKNLVKLLGCSIEGPESLLVYEYLPNKSLDQFLFEKSRTQILNWKQRFNIIQGTAEGLAYLHQGSKKRIIHRDIKSSNVLLDDSLSPKIADFGLARCFAADKTHLSTGIAGTLGYMAPEYLVRGQLTDKADVYSFGVLVMEIICGRRNNVIREDSGSLLQTVWKRYRSNTLVETIDCSLGDDFPIAEASRVFHIGLLCTQASASLRPSMARVVQMLSNSDLDVPTPNQPPFLNAAMLDSDNSIRSCSTNSFVSSALKEIGVSYSNSDEPSGSEEPSIQT 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01018 653 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Vivi6g01018 653 ProSiteProfiles Gnk2-homologous domain profile. 35 137 IPR002902 -
Vivi6g01018 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 443 455 IPR008271 GO:0004672|GO:0006468
Vivi6g01018 653 FunFam Cysteine-rich receptor-like protein kinase 3 147 242 - -
Vivi6g01018 653 Pfam Salt stress response/antifungal 180 239 IPR002902 -
Vivi6g01018 653 Pfam Salt stress response/antifungal 49 135 IPR002902 -
Vivi6g01018 653 ProSiteProfiles Gnk2-homologous domain profile. 139 242 IPR002902 -
Vivi6g01018 653 FunFam Cysteine-rich receptor-like protein kinase 2 35 137 - -
Vivi6g01018 653 Gene3D Transferase(Phosphotransferase) domain 1 398 598 - -
Vivi6g01018 653 FunFam Cysteine-rich receptor-like protein kinase 2 398 598 - -
Vivi6g01018 653 SUPERFAMILY Protein kinase-like (PK-like) 305 617 IPR011009 -
Vivi6g01018 653 Gene3D Phosphorylase Kinase; domain 1 282 397 - -
Vivi6g01018 653 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 87 620 - -
Vivi6g01018 653 SMART serkin_6 322 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01018 653 FunFam Cysteine-rich receptor-like protein kinase 2 289 397 - -
Vivi6g01018 653 ProSitePatterns Protein kinases ATP-binding region signature. 328 350 IPR017441 GO:0005524
Vivi6g01018 653 Pfam Protein kinase domain 323 548 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01018 653 Gene3D - 145 242 IPR038408 -
Vivi6g01018 653 Gene3D - 38 137 IPR038408 -
Vivi6g01018 653 ProSiteProfiles Protein kinase domain profile. 322 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g01018 653 CDD STKc_IRAK 328 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01018 Vivi-Chr6 32245342 32248018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01018 10 487 Receptor kinase-like Gene Family AT5G40380 57.025 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi6g01018 Pkinase 3.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01018 - - gmx:100790404 962.6