Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g01001 ATGGCTAGGAGCTGGCTTATTGACATAGGAGGATTTGCGAAGAAAGTGAAAAGAACTACACTCTCTTCAGCTGATCAGATAAAGGATTGTGGCGCATATCGTGAATGTCCAAACTGTCATTGGCGTATAGACAATAGTGATGTTTCTAGTGAGTGGCCTGGCTTTCCGCTTGGTATAAAGTTTGACCCTTCTGATGTAGAACTGTTAGACCATTTAGCGGCTAAATGTGGTGTTGGGAACGCGACTCCTCACATGTTTATCGAAGAGTTCATACCAACATTGGAAGGAGACCAAGGCATTTGCTATACACATCCTGAAAATCTTCCAGGTGCTAAGAAAGATGGGAGTAGTATTCATTTCTTTCACAGAACAATGAATGCATATAGTACTGGTCAACGAAAGCGTCGAAAGATTCAACATCATGGTTCGACAGAAGATCATGTACGCTGGCACAAGACTGGTAAGACCAAAGCTGTAATAGAAGATGGAGTACATAAGGGCTATAAGAAGATCATGGTTCTGTATATAAGATCTGAGAAAGAGTCAAAATCCTACAAATCTGACTGGAAAATGCATCAGTACCATCTGGGGACTGGTGAAGATGAGAAGAATGGAGAATATGTGGTTTCAAAAATATTTTATAAACATAATGAGAAAAATGAGGAGAAACCAATGGCTGAAGAATCTGACAATATACCATCACGAACAAGTCCAAAGACTCCAAAACCAAATCCTCCAAACCTACTGCGTGCAGGAAAAAGTGTTGGCAATGATGATAACATCGATGAAACTGCACTGTTGTCGTCTGCCGAGGATGCCAAGTCTATCCCTGTAGAATCACATGCCCCACAATCTGAAACTCGGGATCAGGACAACGCAGACAACTCTGCATGGTTGGTTGACGAATCACAGACCATGGAAAATTGCGAATACGAGGGCTTGGATGACATATTATTGTGCAAGGAGATTTTAGATTCATCAGCTCTATTTAATGATTCTGGATTGAACTCAATCACTCCCAATGACCTTGCTTACTATGAAAACAAAATGACAGGGAATTGTAATGTAGCTAGTGAAACTTCAACTTCTGTTCTGGATACACTGGATTTGGGTACTCCTCCAGATTATGATCTTTCGAATTTGACATTTTGTTCTCAAGACAGTATCCTTGATTGGCTGGACTGGTTGTGA 1191 0.4089 MARSWLIDIGGFAKKVKRTTLSSADQIKDCGAYRECPNCHWRIDNSDVSSEWPGFPLGIKFDPSDVELLDHLAAKCGVGNATPHMFIEEFIPTLEGDQGICYTHPENLPGAKKDGSSIHFFHRTMNAYSTGQRKRRKIQHHGSTEDHVRWHKTGKTKAVIEDGVHKGYKKIMVLYIRSEKESKSYKSDWKMHQYHLGTGEDEKNGEYVVSKIFYKHNEKNEEKPMAEESDNIPSRTSPKTPKPNPPNLLRAGKSVGNDDNIDETALLSSAEDAKSIPVESHAPQSETRDQDNADNSAWLVDESQTMENCEYEGLDDILLCKEILDSSALFNDSGLNSITPNDLAYYENKMTGNCNVASETSTSVLDTLDLGTPPDYDLSNLTFCSQDSILDWLDWL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g01001 396 MobiDBLite consensus disorder prediction 219 294 - -
Vivi6g01001 396 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
Vivi6g01001 396 SUPERFAMILY NAC domain 40 215 IPR036093 GO:0003677|GO:0006355
Vivi6g01001 396 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 3 309 IPR044799 GO:0003700
Vivi6g01001 396 FunFam NAC domain-containing protein 8 64 219 - -
Vivi6g01001 396 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Vivi6g01001 396 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g01001 Vivi-Chr6 30969423 30973251 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g01001 33 215 NAC Transcription Factor Family AT4G28500 50.270 1.22e-60 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi6g01001 NAM 6.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g01001 - - gmx:100780442 586.645