Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00996 ATGCTACTGTTTTTTCAACTACTTCCATTCTCAGCCTTCACGTCTACTTATTGTTCATTGTTGCACCATAAATTCTCTCCTTTCTCATTTCACCTCATTCAAGTATTATTATTTTTTTATTCACTCTTTCTTCTCCTCTTGAATTTGCTAGTTTCAATGAGATATTTCTATTTCTATTTCCATCTCAACCTCTTTCTCCTTTCTTTGTTTTTCTCCATCCACACTACTCATCAGCTACAATTCTCTCAAACTCAAGTCCTCCTACAGTTAACAAAGTATCTCCAATACCCTACCTCCTTACAAATCTTCCATAATTACAATACTGACCTTTGCACCCTCACTCCATCTCATCACTTGAGTATTAAATGTGAGGGCAATTCAGTAACTGAACTCAAAATCATGGGAGACAAAACCATCAAACATGGAAAGGTTTCCAGTTTCAATGGCTTTGCACTTCCAAACCAAACACTTTCCAAATCTTTCTCTATTGACTCTTTTGTCACAACATTGACAAGGTTAACAACTTTAAGAGTACTTAGTTTGGTTTCTTTAGGAATTTGGGGTCCACTTCCTGATAAAATTCATAGGCTTAGTTTCCTTCAAGTTTTGGATTTGAGTTCCAATTTCTTATTTGGTTCCATTCCACCAAAGATAGCTACATTGATCAATCTTCAAATACTAACACTTGATGGAAACTATTTCAACACCACAATGCCTGATTTTTTTGAACCTTTGTCTAATTTAAGTATCTTGAGTTTCAAGAACAATCAGTTAAAAGGCTCATTCCCTATTTCACTATGCAAAATCAAGAGCCTTACTGATGTTTCCTTGTCACACAATGAACTATCTGGTGAATTACCGAATCTCACCGCGCTTTCGAGGTTACATGTATTGGATTTGATGGAAAATGGTTTTGATTCTGAGGTACCGTTGATGCCGAAATCGGTTGTCACGGTGTTGCTAAGTAGGAACTTGTTCTCAGGTGAGATTCCTAGTCAGTTTGGTGAACTTAGTCAGCTTCAGAATCTTGATCTTTCGTCGAACCGTCTATCCGGGGTTCCTCCGTCGTCGTTGTTTTCTTTGAGAAACATTAGTTATTTGAATTTGGCAAACAATGTGCTAGGTGGTTCAATTCCAAAGAAGCTGAAATGTGGGAGCAAGCTTGGTTTTGTGGATATTTCTGGTAACTTGTTAAGTGGTTTACTTCCTTCTTGTTTGGAAAGTATATCTGATAGAAGAGTTGTTAGATTTGGTGGAAACTGTTTGTCTGTTAATTCTCAACCTCGGAATCAGAATCAGAATCAGAATCAGAAACACGGTTCTTATTGTGAAGAATCTAGTTCAGGAAAGATCAAGTTTTGGAGATGGGAAATTGATGCTGCAATTGCTATCATTGTTGTAGTTTTTCTTTTCTTGTTAGCTTTTGGAGTTTTCTTTTACAGAAAGTTTCATTCAAGAGAGATTTATAGGCATGAGATGTTGCCAAAGATTGTTCAAGATAATAATAATAACTCGACAACAGGAGTTTCCTCTGAACTCCTTGCTAGTGCAAGGTATATTTCTCAAAAAATGAAGCTAGGGACACAAACTACTACAACATGTAGACACTTTTCGATTGAAGAGTTGAAAGAAATCACAAGAAACTTCGATCTGTCAACTTATATAGGTGAAGGATCCATAGGAAAGCTGTACAAAGGTAAACTAGAGAATGGATCTTATGTGATGATAAGATCATTGGCTCTAAGAAAGAAGTTGTCGATACAAAATCTCAAAGCTAGGTTGGATTTACTCTCGAAGCTTCATCATCCGAATTTGGTTAGTCTTTTGGGTCATTGTATTGATGGTAGAGGAAAAGAGGGTATTAGTCCCCAGAAACTTCATCTTGTATACGAGTATGTGCAAAATGGCGATTATCGTACACATTTGTCAGAATTTTCACTCGATAAGGCGCTAAAATGGTCTGATAGATTATCAATCTTAATCGGAGTTGCCAAGGCGGTTCATTTTTTACATACTGGTATGAAACCAGGTTGTTTTAGAAACCAATTAAAGACAAACAGTATTTTACTTGATGAACATCGCTTTCCCAAGCTAAGCGATTATGGTATGTCCATAATTGCCGAAGAGATCGAAAATATTGAGGTAAACGGAGAGAAACTAAAATATTGCTTAAGGGAAGAATTGGAGGATGATGTTTACAATTTCGGATTCATATTGTTTGAATCACTCGCAGGACCAATTGCAAGTGAGAAAGGAGAAGCGTTTTTTCTTAATGAAAGGGCATCGTTTGACAGTCATGATGGCAGAAAAAGAATTGTGGATCCAGTCGTGTTGACGAGTTGCTGTCAAGAGTCATTATCAATCGTAATATCCATCACAACGAAATGCATTTCTCCACAATCTTCATCTCGGCCTTCTTTTGAAGATGTGTTATGGAATTTACAATATGCAGCTCAAGTTCAAGCCTCAGCAGATGCAGAGCATTCTATATCCTCCTAG 2499 0.3693 MLLFFQLLPFSAFTSTYCSLLHHKFSPFSFHLIQVLLFFYSLFLLLLNLLVSMRYFYFYFHLNLFLLSLFFSIHTTHQLQFSQTQVLLQLTKYLQYPTSLQIFHNYNTDLCTLTPSHHLSIKCEGNSVTELKIMGDKTIKHGKVSSFNGFALPNQTLSKSFSIDSFVTTLTRLTTLRVLSLVSLGIWGPLPDKIHRLSFLQVLDLSSNFLFGSIPPKIATLINLQILTLDGNYFNTTMPDFFEPLSNLSILSFKNNQLKGSFPISLCKIKSLTDVSLSHNELSGELPNLTALSRLHVLDLMENGFDSEVPLMPKSVVTVLLSRNLFSGEIPSQFGELSQLQNLDLSSNRLSGVPPSSLFSLRNISYLNLANNVLGGSIPKKLKCGSKLGFVDISGNLLSGLLPSCLESISDRRVVRFGGNCLSVNSQPRNQNQNQNQKHGSYCEESSSGKIKFWRWEIDAAIAIIVVVFLFLLAFGVFFYRKFHSREIYRHEMLPKIVQDNNNNSTTGVSSELLASARYISQKMKLGTQTTTTCRHFSIEELKEITRNFDLSTYIGEGSIGKLYKGKLENGSYVMIRSLALRKKLSIQNLKARLDLLSKLHHPNLVSLLGHCIDGRGKEGISPQKLHLVYEYVQNGDYRTHLSEFSLDKALKWSDRLSILIGVAKAVHFLHTGMKPGCFRNQLKTNSILLDEHRFPKLSDYGMSIIAEEIENIEVNGEKLKYCLREELEDDVYNFGFILFESLAGPIASEKGEAFFLNERASFDSHDGRKRIVDPVVLTSCCQESLSIVISITTKCISPQSSSRPSFEDVLWNLQYAAQVQASADAEHSISS 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00996 832 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 633 832 - -
Vivi6g00996 832 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 316 448 - -
Vivi6g00996 832 SUPERFAMILY Protein kinase-like (PK-like) 528 814 IPR011009 -
Vivi6g00996 832 Gene3D Ribonuclease Inhibitor 314 436 IPR032675 -
Vivi6g00996 832 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 319 810 - -
Vivi6g00996 832 Gene3D Ribonuclease Inhibitor 81 313 IPR032675 -
Vivi6g00996 832 ProSiteProfiles Leucine-rich repeat profile. 339 360 IPR001611 GO:0005515
Vivi6g00996 832 Gene3D Phosphorylase Kinase; domain 1 510 632 - -
Vivi6g00996 832 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 512 632 - -
Vivi6g00996 832 FunFam Putative inactive leucine-rich repeat receptor-like protein kinase 80 314 - -
Vivi6g00996 832 SUPERFAMILY L domain-like 170 422 - -
Vivi6g00996 832 ProSiteProfiles Protein kinase domain profile. 549 817 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi6g00996 832 Pfam Protein tyrosine and serine/threonine kinase 551 812 IPR001245 GO:0004672|GO:0006468
Vivi6g00996 832 SMART LRR_typ_2 221 244 IPR003591 -
Vivi6g00996 832 SMART LRR_typ_2 337 360 IPR003591 -
Vivi6g00996 832 SMART LRR_typ_2 197 220 IPR003591 -
Vivi6g00996 832 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Vivi6g00996 832 Pfam Leucine rich repeat 223 282 IPR001611 GO:0005515
Vivi6g00996 832 Gene3D Transferase(Phosphotransferase) domain 1 633 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00996 Vivi-Chr6 30727853 30731342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00996 62 759 Miscellaneous Gene Families AT5G14210 54.816 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Vivi6g00996 PK_Tyr_Ser-Thr 1.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00996 - - vvo:131609073 1544.64