Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00979 ATGACACTCTCTTTGTCTCTGGATATTTCTAGAATGGGGAGGAACTCTTCCTTGCAACTCATTATCTGCTTCAATATTGTTTTGTACTTGTTGGCATGGTCAAGAGTGCAAACAAGCCACTCCTTAGTGCTAGAAAGAACTACTATTAGGAGCATAGGTGCTGTGCTTGATTTGGCTTCCTTAATGGGCAAGCAACAGAAGATAGCAATGGATATTGCAGTGGAAGAATTCAACATTGACCAATTCAGCTCTTCCAATATTGATTTGCAGATAAAAGACTCGCATGGAAACTCTGCTCAAGTCATTGCAAGTGTTATGGAACTCTCACAGAGCAACCAAGTGCAAGCGATCATAGGAACTATTACACACAACGAAGCAACACTTGCAAGTGAATTCAGAGACACCATAAACACCATTCCTATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAATTACTATCTCCTAGATTGCCTAATTTCATCCAAGTAGGGGATGATATTAACCTTCATATGCAATGCATATCAGCAATTGTAGGAGAATTCGGATGGAAAAAGGTGACAGTAATTTATGAACTTAATAATGACCTTTCGTCTGATCCAGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTTGTTGGTTGTGAAATTGATAACCATTTAGCTTTCCCGTCTTTATCAACTCTTTCAGACCCGAAAACTACAATTGAAAATGAGCTTAATAAGCTGAAAAAGAAGAGTAATAGGGTCTTCTTGATTGTTCATTCTTCTTTAGAGTTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTATGGATTATCCCAAATGAAGTTGCTGGTCTTCTTGATTCGGTTAACTCTTCTGTTATCTTCAACATGCAAGGCGTTGTTGGATTTAAAACACACTTCATTGAAAAGAGTGAGGCTTTTAGAGAGTTTAAGTTCAAATTCCAGAGAAAATTTTCTCTCGAATACCCTGAAGAAGATAACATAAATCCAAGTATTTTTGCACTTCAAGCGTATGATGCAACTAAGGCTATTGCTAAGGCTGCAAACAAATCATCACAGGGAAAATTCAGCCTCACAGAATTCTCAAAAATGACTTTTTTGTCCAATAAATTTGAAAGACTAAGTGGAAAAACATTCTCGAAGAACGGACAATTGTTGCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATCTTGGTCTCCAGCGCTTGGTTTTTCCAAACACATTGTTAGCCATAATAAGGTAATGGAGATAAGGGCAAACAATGATGATTCTGATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAATTGCAATCAGTTCCTAAGGGTCATAATAATGAAGAAAGGTCGTTGAAAATAGCAATACCTTCAAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCAGGAAAACAATGAACCTAAAGTCACTGGTTTCTCAGTCAGTGTCTTTAAAGCAGCTGTCAAACGTTTACCTTATGTTTTAAATTACACTTTTTTTCCCTTCAATGGATCGTATGATGAAATGGTCGATCATGTCTACAATAAGACATTGGATGCTGCAGTTGGCGATACGTCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAGCCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGTTGATAGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGACCCTTAGCTCAAGTTGTACTGACACCATGGTTATTCGCTATTTTCATCGTGACAAATAGTTTCACAGCAAGTTTGACATCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGAAAGAAATTCCCCAATTGGTTGTGACGGAAATTCCTTTATTATCAAGTATTTGACCGAAGTACTAAATTTCAAGGCTGGGAATATAAGAAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCCGCCTTCTTCGTCGCGCCTCATGCTAAAGTCTTTCTAGCAAAGTACTCGTGTAAGGGATTTATCAAAGCAGGGAATACTTACAGGCTTGGTGGCTTTGGTTTTGTGGGTTTCTCTCCTCTCATTGTCACTGAATTTTTGACATGTTTGGTAGAAGTGAAATTGGGGTGTTTCCAAAAGGTTCAAGTCTTGCTGCCGACATATCAGAGGCATTGCTGA 2427 0.377 MTLSLSLDISRMGRNSSLQLIICFNIVLYLLAWSRVQTSHSLVLERTTIRSIGAVLDLASLMGKQQKIAMDIAVEEFNIDQFSSSNIDLQIKDSHGNSAQVIASVMELSQSNQVQAIIGTITHNEATLASEFRDTINTIPIMSLTSFSARPELLSPRLPNFIQVGDDINLHMQCISAIVGEFGWKKVTVIYELNNDLSSDPGILLSLSYSLKLVGCEIDNHLAFPSLSTLSDPKTTIENELNKLKKKSNRVFLIVHSSLELANMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSSVIFNMQGVVGFKTHFIEKSEAFREFKFKFQRKFSLEYPEEDNINPSIFALQAYDATKAIAKAANKSSQGKFSLTEFSKMTFLSNKFERLSGKTFSKNGQLLQSPTFNIINVIGKSYREMASWSPALGFSKHIVSHNKVMEIRANNDDSDGVFKTVYWPGELQSVPKGHNNEERSLKIAIPSNGAFTQFVNVEYDQENNEPKVTGFSVSVFKAAVKRLPYVLNYTFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVIWLIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLAQVVLTPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIIKYLTEVLNFKAGNIRKINSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVGFSPLIVTEFLTCLVEVKLGCFQKVQVLLPTYQRHC 808
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00979 808 FunFam Glutamate receptor 467 582 - -
Vivi6g00979 808 SUPERFAMILY Periplasmic binding protein-like I 52 464 IPR028082 -
Vivi6g00979 808 SUPERFAMILY Periplasmic binding protein-like II 468 772 - -
Vivi6g00979 808 Pfam Receptor family ligand binding region 67 408 IPR001828 -
Vivi6g00979 808 Pfam Bacterial extracellular solute-binding proteins, family 3 494 759 IPR001638 -
Vivi6g00979 808 Gene3D - 466 583 - -
Vivi6g00979 808 FunFam Glutamate receptor 171 340 - -
Vivi6g00979 808 Gene3D - 45 167 - -
Vivi6g00979 808 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 777 IPR015683 -
Vivi6g00979 808 Pfam Ligand-gated ion channel 592 691 IPR001320 GO:0015276|GO:0016020
Vivi6g00979 808 Gene3D - 584 714 - -
Vivi6g00979 808 CDD PBP1_GABAb_receptor_plant 51 429 IPR044440 -
Vivi6g00979 808 SMART GluR_14 471 793 IPR001320 GO:0015276|GO:0016020
Vivi6g00979 808 CDD GluR_Plant 472 777 - -
Vivi6g00979 808 Gene3D - 168 342 - -
Vivi6g00979 808 FunFam Glutamate receptor 583 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00979 Vivi-Chr6 30153585 30160532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00979 46 772 Ion Channels AT2G29120 31.373 1.19e-100 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00979 - - vvo:131609067 1495.72