Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00978 ATGACACTCTCTTTGTCTCTGGATATTTCTAGAATGGGGAGGAACTCTTCCTTGCAACTCATTATCTGCTTCAATATTGTTTTGTACTTGTTGGCATGGTCAAGAGTGCAAACAAGCCACTCCTTAGTGCTAGAAAGAACTACTATTAGGAGCATAGGTGCTGTGCTTGATTTGGCTTCCTTAATGGGCAAGCAACAGAAGATAGCAATGGATATTGCAGTGGAAGAATTCAACATTGACCAATTCAGCTCTTCCAATATTGATTTGCAGATAAAAGACTCGCATGGAAACTCTGCTCAAGTCATTGCAAGTGTTATGGAACTCTCACAGAGCAACCAAGTGCAAGCGATCATAGGAACTATTACACACAACGAAGCAACACTTGCAAGTGAATTCAGAGACACCATAAACACCATTCCTATCATGTCTCTAACTTCATTTTCAGCCAGACCAGAATTACTATCTCCTAGATTGCCTAATTTCATCCAAGTAGGGGATGATATTAACCTTCATATGCAATGCATATCAGCAATTGTAGGAGAATTCGGATGGAAAAAGGTGACAGTAATTTATGAACTTAATAATGACCTTTCGTCTGATCCAGGGATACTACTTAGCCTCTCTTATTCTCTTAAACTTGTTGGTTGTGAAATTGATAACCATTTAGCTTTCCCGTCTTTATCAACTCTTTCAGACCCGAAAACTACAATTGAAAATGAGCTTAATAAGCTGAAAAAGAAGAGTAATAGGGTCTTCTTGATTGTTCATTCTTCTTTAGAGTTGGCTAACATGCTTTGTGAGAAAGCAAAGCAAATAGGTTTGATGGAAAAAGGTTCTGTATGGATTATCCCAAATGAAGTTGCTGGTCTTCTTGATTCGGTTAACTCTTCTGTTATCTTCAACATGCAAGGCGTTGTTGGATTTAAAACACACTTCATTGAAAAGAGTGAGGCTTTTAGAGAGTTTAAGTTCAAATTCCAGAGAAAATTTTCTCTCGAATACCCTGAAGAAGATAACATAAATCCAAGTATTTTTGCACTTCAAGCGTATGATGCAACTAAGGCTATTGCTAAGGCTGCAAACAAATCATCACAGGGAAAATTCAGCCTCACAGAATTCTCAAAAATGACTTTTTTGTCCAATAAATTTGAAAGACTAAGTGGAAAAACATTCTCGAAGAACGGACAATTGTTGCAATCACCAACTTTCAACATAATTAATGTGATTGGGAAAAGTTATAGAGAAATGGCATCTTGGTCTCCAGCGCTTGGTTTTTCCAAACACATTGTTAGCCATAATAAGGTAATGGAGATAAGGGCAAACAATGATGATTCTGATGGAGTTTTCAAAACAGTTTATTGGCCGGGAGAATTGCAATCAGTTCCTAAGGGTCATAATAATGAAGAAAGGTCGTTGAAAATAGCAATACCTTCAAATGGTGCTTTTACTCAGTTTGTGAATGTGGAATATGATCAGGAAAACAATGAACCTAAAGTCACTGGTTTCTCAGTCAGTGTCTTTAAAGCAGCTGTCAAACGTTTACCTTATGTTTTAAATTACACTTTTTTTCCCTTCAATGGATCGTATGATGAAATGGTCGATCATGTCTACAATAAGACATTGGATGCTGCAGTTGGCGATACGTCAATAGTGGCATATAGATATCATTTAGTGGAATTCTCACAGCCTTATATTGAATCTGGCCTACACATGGTGGTTACTGAACAACCAGCAAAATCAAAAGAAACATGGATGTTTTTGGCTGCCTTTACAAAAGAGATGTGGTTGATGATGACAGCTATGCATGTTTTTGTGGGATTTGTTATTTGGTTGATAGAAAGGGAAGTAAATGAAGATCTAAGGGGATTTGGGTCCATGCTATGGTTTTTAGTCACTGTACTATTTTATGCACACAGAGAACCAATAAGAAGACCCTTAGCTCAAGTTGTACTGACACCATGGTTATTCGCTATTTTCATCGTGACAAATAGTTTCACAGCAAGTTTGACATCTATAACTATTTCACAAGTAAAGCCATCTGTGTTAGATATACAGACCCTTAAAGAAAGAAATTCCCCAATTGGTTGTGACGGAAATTCCTTTATTATCAAGTATTTGACCGAAGTACTAAATTTCAAGGCTGGGAATATAAGAAAAATAAATTCCATGAGTGACTACCCTGCTGCCTTTGATAACAAGGAAATAGAAGCCGCCTTCTTCGTCGCGCCTCATGCTAAAGTCTTTCTAGCAAAGTACTCGTGTAAGGGATTTATCAAAGCAGGGAATACTTACAGGCTTGGTGGCTTTGGTTTTGTGTTTCCAAAAGGTTCAAGTCTTGCTGCCGACATATCAGAGGCATTGCTGAGTATGATAGAGAGTGGAGAAACAGAACAACTAGAAAAAGAAATGTTGAATGGGATAGAAAATGAAGGCAAAGAAAATTGTTCAGATTTAGCGAGCAAGGGAAAAAATAATTCATCGATAGGCCTTCCGCCTTACCTTGGTCTGTTTTCGATCTGTTCTACTGTCACTATTCTTGGTTTGTCATATTACGTGATTTGTTGGTTAGTGAAGAATGTAGAAACTTTGGCAAGCCACGCAGTTTTAACATTAACACAATTATGGAGAATATGGAGATGGACAACCAATATTTTTGCTAGGTGCTGTTCAAAAATGCAATCAAGGACCATGAGAAGAGTAGGCAGCTGCACAGAAACAAGAAATGCAGAAGAGAATGTCACTAATAGCCAGCAAATCCCAGTGGTGGTTGAGCTTGTTGATACTGTACTGGCCGCTCATGCTTCATGA 2808 0.3789 MTLSLSLDISRMGRNSSLQLIICFNIVLYLLAWSRVQTSHSLVLERTTIRSIGAVLDLASLMGKQQKIAMDIAVEEFNIDQFSSSNIDLQIKDSHGNSAQVIASVMELSQSNQVQAIIGTITHNEATLASEFRDTINTIPIMSLTSFSARPELLSPRLPNFIQVGDDINLHMQCISAIVGEFGWKKVTVIYELNNDLSSDPGILLSLSYSLKLVGCEIDNHLAFPSLSTLSDPKTTIENELNKLKKKSNRVFLIVHSSLELANMLCEKAKQIGLMEKGSVWIIPNEVAGLLDSVNSSVIFNMQGVVGFKTHFIEKSEAFREFKFKFQRKFSLEYPEEDNINPSIFALQAYDATKAIAKAANKSSQGKFSLTEFSKMTFLSNKFERLSGKTFSKNGQLLQSPTFNIINVIGKSYREMASWSPALGFSKHIVSHNKVMEIRANNDDSDGVFKTVYWPGELQSVPKGHNNEERSLKIAIPSNGAFTQFVNVEYDQENNEPKVTGFSVSVFKAAVKRLPYVLNYTFFPFNGSYDEMVDHVYNKTLDAAVGDTSIVAYRYHLVEFSQPYIESGLHMVVTEQPAKSKETWMFLAAFTKEMWLMMTAMHVFVGFVIWLIEREVNEDLRGFGSMLWFLVTVLFYAHREPIRRPLAQVVLTPWLFAIFIVTNSFTASLTSITISQVKPSVLDIQTLKERNSPIGCDGNSFIIKYLTEVLNFKAGNIRKINSMSDYPAAFDNKEIEAAFFVAPHAKVFLAKYSCKGFIKAGNTYRLGGFGFVFPKGSSLAADISEALLSMIESGETEQLEKEMLNGIENEGKENCSDLASKGKNNSSIGLPPYLGLFSICSTVTILGLSYYVICWLVKNVETLASHAVLTLTQLWRIWRWTTNIFARCCSKMQSRTMRRVGSCTETRNAEENVTNSQQIPVVVELVDTVLAAHAS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00978 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 51 879 IPR015683 -
Vivi6g00978 935 Pfam Ligand-gated ion channel 803 840 IPR001320 GO:0015276|GO:0016020
Vivi6g00978 935 FunFam Glutamate receptor 171 340 - -
Vivi6g00978 935 FunFam Glutamate receptor 583 715 - -
Vivi6g00978 935 Gene3D - 584 714 - -
Vivi6g00978 935 Gene3D - 45 167 - -
Vivi6g00978 935 SMART GluR_14 471 806 IPR001320 GO:0015276|GO:0016020
Vivi6g00978 935 Pfam Bacterial extracellular solute-binding proteins, family 3 494 802 IPR001638 -
Vivi6g00978 935 CDD PBP1_GABAb_receptor_plant 51 429 IPR044440 -
Vivi6g00978 935 FunFam Glutamate receptor 467 582 - -
Vivi6g00978 935 Pfam Receptor family ligand binding region 67 408 IPR001828 -
Vivi6g00978 935 CDD GluR_Plant 472 804 - -
Vivi6g00978 935 Gene3D - 168 341 - -
Vivi6g00978 935 SUPERFAMILY Periplasmic binding protein-like I 52 464 IPR028082 -
Vivi6g00978 935 PIRSF IGluLR_plant 14 921 IPR017103 -
Vivi6g00978 935 Gene3D - 466 583 - -
Vivi6g00978 935 SUPERFAMILY Periplasmic binding protein-like II 468 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00978 Vivi-Chr6 30152445 30160532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00978 52 898 Ion Channels AT2G29100 30.272 7.06e-113 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00978 - - vvo:131609067 1818.9