Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00953 ATGTCATCCTCTTCCTCCATTTCAAATTCACTTCCTTACCCACACTCCAACATTCACAAATTCCATACCTTCACTTCCAACCACTACAAACCCCAATCCCGTTTTCTCTTCTCCTTCCCCGTATCCAAAATCAACAGCGTCAGGAGCCTTAAAACCCGTCGCGCTTCATATGATGCTTCTAGTTTCCATGGGGTCGAGTTCATTGTTTCCATTTTACCAGGAGGCGATTGGTGGTCATTACCGAAGCACCGGGATGACCCCGCAGAACTGACGGAGGCTAAGCTTGCTCTCCGACGAATGTTGGAGCTAGTTTCCGATGAGCGGTGGGTTGCAGTCGTCGCATTTGTGTCCCTTGTCATTGCTGCTCTTTCAGAGATCACCATGCCAAGTATTCTGGCAGCATCAATATTTTCGGCACAAAGTGGCAAGACTGCGGCATTCTCTAGGAATGCAATGTTTTTGGTTCTTCTATGTTTCACTTCAGGGATATGCAGTGGTTTGCGAAGTGGCTGCTTTGGAATTTTGAATGTAACCTTGGTAAAGCGTCTCCGAGAAAACTTGTATACAGCCATTCTTTTTCAGGACATATCCTATTTTGATAAAGAAAAAGTTGGCACCTTGACAAGCAGGCTTGCAGCAGATTGTCAACAGCTTTCACATGTTATAGGAAATGATCTTCAGTTAATATTACGCAACTCTTTGCAGGGAACAGGAGCAATAATTAATTTACTGGTTTTATCTTGGCCTCTAGCATTATCTGCACTGATGATTTGTTCCGTATTATCTGCAATTTTCCTGGTTTATGGCAGGTATCAAAGAAAAGCAGCAAAGTTAACCCAAGATTTCTCTGCTTGTGCTAATGATGTAGCTCAGGAAACACTTTCTTTGATAAGAACTGTTCGAGTGTATGGGACCAAAAAAGAAGAATTTGAAAGGTACAACCATTGGTTACAGAAATTAGCATTTATTAGCAGTCGAGACAGCGTGGGTAATGGTTTGTGGAACCTGAGCTTTAACACCCTTTACCGTTCAACTCAGATATTTGCAGTTCTTTTAGGAGGAATGTCTGCTCCCAGCTGTTGTGTAACTGTTGAGCAACTTACTAAGTATGTATTATACTGTGAGTGGTTGATTTTTGCCACTTGGAGGGTGACAAACAGTTTATCATCATTAATGCAGTCCATCGGAGCATCTGAACAAATTTTCGAAATGATGAACCGATTGCCCTGTGACCAATTCTTAGTCCAAGGAATTAAGTTGCAGAGGCTAATGGGCCATATTCAGTTTGTTGATGTATCATTTCATTATCCTGCAAGGAGTATGATCCCGGTTCTAGAACACTTAAACTTCTCTGTAAAAGCAAATGAAGTCATTGCCATTGTTGGTCTGAGTGGCAGTGGAAAGAGCACGTTAATCAACCTTTTACTTCGCCTGTATGAGCCTTGTAGTGGTCAGGTATGTATTGATGGTTTCCCTCTCAAGGAGTTGGACATTAGATGGCTGAGGCAGAACATTGGATATGTTGCGCAGGAACCGCATATCTTTCATATGGACATAAAGTCGAACATAGAGTATGGTTGCCCTAAGAACTTAAATGAAGAAGATATTATAAAGGCAGCAAAACTGGCTTATGCCCATGACTTTATTTCCTCTCTTCCTAATGGCTACGACACCGTTGATGGCAATGCACTTAGTGGTGGACAAAAGCAGCGAATTGCCATTGCCAGGTCCATTATCAGAGACCCAGTTATTATGATTCTGGACGAACCAACCAGTGCCTTGGATTCTGAAAGTGAGCATTATATCAAGGAGGTGTTGTATACATTGAGAAATGAAAATAAATCAAGAACCATCATTATCATAGCACATAGGCTTTCTACTGTAAAAGCTGCTGACCGAATCATTGTCATGGATAGTGGTCGAATTATTGAGATGGGTAACCATGAAGAGCTTCTGGTCAAAGATGGGCTCTATGCCAAGTTAAATAAAATTCAAGCAGATGTATTTTAA 2010 0.4164 MSSSSSISNSLPYPHSNIHKFHTFTSNHYKPQSRFLFSFPVSKINSVRSLKTRRASYDASSFHGVEFIVSILPGGDWWSLPKHRDDPAELTEAKLALRRMLELVSDERWVAVVAFVSLVIAALSEITMPSILAASIFSAQSGKTAAFSRNAMFLVLLCFTSGICSGLRSGCFGILNVTLVKRLRENLYTAILFQDISYFDKEKVGTLTSRLAADCQQLSHVIGNDLQLILRNSLQGTGAIINLLVLSWPLALSALMICSVLSAIFLVYGRYQRKAAKLTQDFSACANDVAQETLSLIRTVRVYGTKKEEFERYNHWLQKLAFISSRDSVGNGLWNLSFNTLYRSTQIFAVLLGGMSAPSCCVTVEQLTKYVLYCEWLIFATWRVTNSLSSLMQSIGASEQIFEMMNRLPCDQFLVQGIKLQRLMGHIQFVDVSFHYPARSMIPVLEHLNFSVKANEVIAIVGLSGSGKSTLINLLLRLYEPCSGQVCIDGFPLKELDIRWLRQNIGYVAQEPHIFHMDIKSNIEYGCPKNLNEEDIIKAAKLAYAHDFISSLPNGYDTVDGNALSGGQKQRIAIARSIIRDPVIMILDEPTSALDSESEHYIKEVLYTLRNENKSRTIIIIAHRLSTVKAADRIIVMDSGRIIEMGNHEELLVKDGLYAKLNKIQADVF 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00953 669 Gene3D - 417 666 IPR027417 -
Vivi6g00953 669 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 112 393 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g00953 669 FunFam Multidrug ABC transporter ATP-binding protein 419 668 - -
Vivi6g00953 669 Pfam ABC transporter 445 592 IPR003439 GO:0005524
Vivi6g00953 669 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 427 664 IPR003439 GO:0005524
Vivi6g00953 669 Gene3D ABC transporter type 1, transmembrane domain 79 261 IPR036640 GO:0005524|GO:0016020
Vivi6g00953 669 SUPERFAMILY ABC transporter transmembrane region 94 409 IPR036640 GO:0005524|GO:0016020
Vivi6g00953 669 ProSitePatterns ABC transporters family signature. 564 578 IPR017871 GO:0005524|GO:0016887
Vivi6g00953 669 PANTHER ABC TRANSPORTER B FAMILY 87 662 IPR039421 -
Vivi6g00953 669 Pfam ABC transporter transmembrane region 113 354 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vivi6g00953 669 SMART AAA_5 454 649 IPR003593 GO:0016887
Vivi6g00953 669 Gene3D ABC transporter type 1, transmembrane domain 267 667 IPR036640 GO:0005524|GO:0016020
Vivi6g00953 669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 665 IPR027417 -
Vivi6g00953 669 CDD ABC_6TM_TAP 114 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00953 Vivi-Chr6 29667821 29697849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00953 22 665 Calmodulin-binding Proteins AT2G36910 29.640 4.71e-72 252