Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00901 ATGGTCAGTAAATACGAAGGAAATGCAATAGGAATAGACCTTGGAACAACCTACTCGTGTGTTGCTGTTTGGTTGGAGAAAAAAAACAGTGTTGAGATTATCCACAATGATGAAGGAAACAAAATCACACCTTCTTTTGTTGCTTTCACTGATGGTCAAAAATTAGTTGGTGATGCTGCTAAGGATCAGGCTGCTATCAATCCAGAAAACACTGTCTTTGATGCTAAAAGGTTAATTGGTAGAAAGTTTAATGATCCCGATGTTCAAAAGGATATTATGTTGTGGCCGTTCAAGGTTATTTCGGGTGTAAATGACAAACCTATGATTACTGTTAAGTATAAAGGTCAAGAGAAGCAACTTTGTGCTGAAGAAATCTCATCTATAGTCCTCACAAACATGAAGGAGATTGCTGAGGCTTATTTGGACTCGCCCGTTAAAAATGCAGTTGTGACTGTGCCTGCTTATTTCAATGATTCTCAACGAAAAGCAACCATGGATGCTGGTGCCATTGCTGGCCTTAATGTTATGAGGATAATTAATGAACCTACTGCTGCAGCCATTGCTTATGGCCTTGACAAGAGAGACAAGAGAGATAATGTCTTTGAAGTTAAAGCAACAGGTGGAAATACTCATCTTGGAGGCGAGGATTTTGATAATAGAATGTTGAACTACTTTGTTCAAGAATTTAAAAGGAAGAACAATGTGGATATTACTAGTAATCCTAGAGCCCTGAGGAGGTTGAGAACTGCTTGTGAAAAGGCAAAAAGGACACTCTCTTTTAAATTGGTTACCAATATAGAGATTGATTATTTATGTGAGGGCATTGATTTCTCTTCTTCAATCACTCGTGTTAAGTTTGAGGAAATTAATATGGACCTTTTTAATGAGTGTATAAAGACTGTGGAAAGTTGTCTTACGGATTCTAAGATTGATAAGAGTAGTGTAGGTGATGTTGTTCTTGTAGGTGGCTCGTCTAGGATTCCCAAAGTGCAACAACTATTGAGTGACTTTTTCGATGGAAAAGATTTGTGCAAGAGCATCAATCCTGATGAGGCTGTTGCTTGTGGTGCTGCGATTCAGGCTGCTTTGTTGAGTAAAACCATTAAGAATGTTCCAAACTTGGTGTTGCGAGATGTTACACCCTTGTCACTTGGTGTTTCCCTTGTAGGTAACATAATGGGTGTGGTGATTCCTAGAAACACTTCTATACCGGTTAAGAAGACAGAAAGATATGTAATCGGTAAGGATAACCAATGTAGTGTCCCAATTATAGTTTATGAGGGTGAGAGAGCAAGCGTTAGTGACAACAATTTGTTTGGTTTTTTTATTCTCTCTTGCATTCCTGCTCCTTGTGGCCATCCCTTAGATGTAACCTTTGCGATAGATGAAAATGGTATCCTAACTGTTTCTGCTAAGGAAATATCCACTGGAAATACAAATGAAATCACGATAACTAATGACAAAGAAAGGTTATCACATGATGAAATTAAGAAACTGATTCAAGAAGCAGCTCAGTATCGTGCTGAAGATGAGAAATTCCTAAGGAAAGCAAAGGTAATGAATGCATTAGATTACTGTGTTTACAAGCTTAGAGATACTTTAAAGAAGAAGGATGTTAAATTAAAGCTCCTTCCTCGAGAGAAAAGCAAGATCAGTCGTGCAATTACCGTGGCTACTAAATTGCTTGATAAGAATAACCAGCTCAATGAAATAGATATTCTTGAGGATCATCTGAAAAAGCTTAAGAGTGTGTTTGGATGA 1761 0.3782 MVSKYEGNAIGIDLGTTYSCVAVWLEKKNSVEIIHNDEGNKITPSFVAFTDGQKLVGDAAKDQAAINPENTVFDAKRLIGRKFNDPDVQKDIMLWPFKVISGVNDKPMITVKYKGQEKQLCAEEISSIVLTNMKEIAEAYLDSPVKNAVVTVPAYFNDSQRKATMDAGAIAGLNVMRIINEPTAAAIAYGLDKRDKRDNVFEVKATGGNTHLGGEDFDNRMLNYFVQEFKRKNNVDITSNPRALRRLRTACEKAKRTLSFKLVTNIEIDYLCEGIDFSSSITRVKFEEINMDLFNECIKTVESCLTDSKIDKSSVGDVVLVGGSSRIPKVQQLLSDFFDGKDLCKSINPDEAVACGAAIQAALLSKTIKNVPNLVLRDVTPLSLGVSLVGNIMGVVIPRNTSIPVKKTERYVIGKDNQCSVPIIVYEGERASVSDNNLFGFFILSCIPAPCGHPLDVTFAIDENGILTVSAKEISTGNTNEITITNDKERLSHDEIKKLIQEAAQYRAEDEKFLRKAKVMNALDYCVYKLRDTLKKKDVKLKLLPREKSKISRAITVATKLLDKNNQLNEIDILEDHLKKLKSVFG 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00901 586 Gene3D Actin; Chain A, domain 4 214 296 - -
Vivi6g00901 586 FunFam Heat shock protein 70 10 208 - -
Vivi6g00901 586 ProSitePatterns Heat shock hsp70 proteins family signature 3. 318 332 IPR018181 -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 148 168 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 8 21 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 347 367 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 315 331 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 60 68 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 38 50 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 373 392 - -
Vivi6g00901 586 PRINTS 70kDa heat shock protein signature 452 468 - -
Vivi6g00901 586 Coils Coil 564 584 - -
Vivi6g00901 586 FunFam Heat shock 70 kDa 213 296 - -
Vivi6g00901 586 Gene3D - 345 362 - -
Vivi6g00901 586 Gene3D - 10 193 - -
Vivi6g00901 586 Gene3D - 73 128 - -
Vivi6g00901 586 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 370 523 IPR029047 -
Vivi6g00901 586 PANTHER HEAT SHOCK PROTEIN 70KDA 9 553 IPR013126 GO:0005524|GO:0140662
Vivi6g00901 586 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vivi6g00901 586 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 369 520 IPR029047 -
Vivi6g00901 586 FunFam heat shock 70 kDa protein-like 73 128 - -
Vivi6g00901 586 Pfam Hsp70 protein 199 583 IPR013126 GO:0005524|GO:0140662
Vivi6g00901 586 Gene3D - 198 344 - -
Vivi6g00901 586 Coils Coil 496 516 - -
Vivi6g00901 586 Gene3D - 521 586 IPR029048 -
Vivi6g00901 586 SUPERFAMILY Actin-like ATPase domain 196 364 IPR043129 -
Vivi6g00901 586 SUPERFAMILY Actin-like ATPase domain 9 193 IPR043129 -
Vivi6g00901 586 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 520 585 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00901 Vivi-Chr6 27442204 27444262 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00901 1 584 Calmodulin-binding Proteins AT3G12580 62.193 0.0 738