Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00896 ATGAAAATAACAAGGCACATGACATGGCTCATATATGAAACACAAGAAAACAAAGTAACCACAAGTGAGGGGCCTACTATTGGTATCGATCTTGGCACAACCTATTCATGTGTTGCTGTATGGCAGGATCAAAACAATCGAGCAAAGATCATACATAATGATCAAGGCAACAGAACCACTCCTTCTTTTGTTGCTTTTACTAATGCTCAAAGGTTGATTGGTGAAGCTGCTAAAAATCAGGCTGCTTCAAATGCAACCAACACTGTGTTTGATGCGAAAAGGTTGATTGGAAGGAAATATAGTGATTCTGCTATTCAAAATAACATACAATTGTGGCCATTTAAGGTTGTTGCTGGAAACGACAACAAACCTGAGATCATTGTTAAATACAAGGGTGAAGAAAAACGTCTCTGTGCCGAGGAAATCTCATCCATGATTCTCATCAAGATGCGTGAGATTGCAGAGAAATTTTTGGAGTCACCCGTGAAGAATGCAGTTGTTACAGTGCCTGCTTATTTTAACGATTCTCAGCGAAAAGCCACAAAAGATGCTTGTGTTATTGCTGGCCTCAATGTGTTGCGGATAATCAATGAACCAACAGCGGCTGCCCTTGCGTATGGCCTTCAAAAGAGAGCAAATAATGTTGGAAAACGAAATGTGTTCGTCTTTGATCTCGGCGGTGGCACTTTCGATGTGTCTCTCCTCACACTCGAAGATAATGGGTTTGTAGTGAAAGCCACTGCCGGAGATACACTTCTTGGAGGAGAGGACTTTGATAGCAGAATGGTGAACTATTTAGTGGAAGAGTCTGAGAGGAAGAATAAAGTGGACATTAGGGAGAACCCGAGGGTTCTAAGGAAGTTAAGAACTGCTTGTGAAAAGGCTAAGAGGACATTGTCATTTGATACTGAGACTACAATTGAAATAGATTCTTTATGTGATGGAATTGACTTCCAATTGTTAATGACTAGGTCCATGTTTGAACAACTCAACATGGATCAGTTTGAAAAGTGCTTGGAAGTTGTGAAGAAGGGTCTTGTTGATGCTAAGATGGCTATCGGTAAAGTGGACGATGTTGTTCTAGTTGGCGGTAGTTCTAGGATTCCCATAGTGCAGCAACTATTGAAGGACTTTTTCAAAGGGAAGAATCTGTGTAGTAGCATCAACCCTGACGAGGCTGTTGCTTATGGTGCAGCAGTACAAGCTGCTATGCTGAGTGAAGGTTTTAAGAATGTTCCAAACATTGTTTTGCATGTTACGCCTTTGTCTCTTGGTACATCTATAAATGATAATCTCATGAGTGTAGTTATCCCAAGGAACACATCAATTCCTGTGAAAAAGACACAAACTTTTTATACACTTGAAGATGATCAGTATTTTATCACTGTTGATATTTATGAAGGCGAGCGGATGCTCATGCTAAGCTGTTACTTGGTGGCTAAGCTAAATGCTCATGCTAAGTTACTTAATGATAAGAATGAGAAAGAATATGATGATTATTCTTATATCTGGGCTAATTTCTTACTCATTCCAAAAGATGCTTGA 1545 0.3981 MKITRHMTWLIYETQENKVTTSEGPTIGIDLGTTYSCVAVWQDQNNRAKIIHNDQGNRTTPSFVAFTNAQRLIGEAAKNQAASNATNTVFDAKRLIGRKYSDSAIQNNIQLWPFKVVAGNDNKPEIIVKYKGEEKRLCAEEISSMILIKMREIAEKFLESPVKNAVVTVPAYFNDSQRKATKDACVIAGLNVLRIINEPTAAALAYGLQKRANNVGKRNVFVFDLGGGTFDVSLLTLEDNGFVVKATAGDTLLGGEDFDSRMVNYLVEESERKNKVDIRENPRVLRKLRTACEKAKRTLSFDTETTIEIDSLCDGIDFQLLMTRSMFEQLNMDQFEKCLEVVKKGLVDAKMAIGKVDDVVLVGGSSRIPIVQQLLKDFFKGKNLCSSINPDEAVAYGAAVQAAMLSEGFKNVPNIVLHVTPLSLGTSINDNLMSVVIPRNTSIPVKKTQTFYTLEDDQYFITVDIYEGERMLMLSCYLVAKLNAHAKLLNDKNEKEYDDYSYIWANFLLIPKDA 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00896 514 PANTHER HEAT SHOCK PROTEIN 70KDA 27 478 IPR013126 GO:0005524|GO:0140662
Vivi6g00896 514 Gene3D - 211 385 - -
Vivi6g00896 514 FunFam heat shock 70 kDa protein-like 90 145 - -
Vivi6g00896 514 FunFam Heat shock 70 kDa 254 337 - -
Vivi6g00896 514 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 401 494 IPR029047 -
Vivi6g00896 514 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 415 482 IPR029047 -
Vivi6g00896 514 SUPERFAMILY Actin-like ATPase domain 25 210 IPR043129 -
Vivi6g00896 514 ProSitePatterns Heat shock hsp70 proteins family signature 1. 29 36 IPR018181 -
Vivi6g00896 514 SUPERFAMILY Actin-like ATPase domain 217 406 IPR043129 -
Vivi6g00896 514 Gene3D - 27 400 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 388 408 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 77 85 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 165 185 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 356 372 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 413 432 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 25 38 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 228 238 - -
Vivi6g00896 514 PRINTS 70kDa heat shock protein signature 55 67 - -
Vivi6g00896 514 ProSitePatterns Heat shock hsp70 proteins family signature 2. 222 235 IPR018181 -
Vivi6g00896 514 ProSitePatterns Heat shock hsp70 proteins family signature 3. 359 373 IPR018181 -
Vivi6g00896 514 FunFam Heat shock protein 70 27 219 - -
Vivi6g00896 514 Pfam Hsp70 protein 27 481 IPR013126 GO:0005524|GO:0140662
Vivi6g00896 514 Gene3D - 90 145 - -
Vivi6g00896 514 Gene3D Actin; Chain A, domain 4 254 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00896 Vivi-Chr6 27401984 27407171 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00896 22 482 Calmodulin-binding Proteins AT3G12580 68.035 0.0 632