Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00895 ATGGGAAGAAAATATAGTGATCCTATAATTCAGAACAATCTACTGTCGTGGCCGTTTGGGATCATTTCTAGTAAAGATGACAAACCCGTGATCCTTGTTAATTACAACGGTAAAGAAAAACACCTTTCTCCTGAAGAAATATCATCTCTGATATTCAAAAAGATGTTGGATGTTGCAGAGGCACATTTGAAGTCACCGATAAAAAATGCTGTGATAACAATGCCGGTTTATTTTAATGATTCTCAGCGAAAAGCCACCAAAGATGCTGCTGTCATTGCTGGCATCAATGTAGTGCAAATAATTAACGAACCAGTTGCTGCTGCTCTTTCATATGGTCTTTATAATAAAGCGGTTTGTGCTGAAAATAGAAATATTGTCATAGTTGATCTTGGAGGTGGAACATTTGGTGTGTCTCTCATCACATTCAAGGATTACAAGTTTGAAATAAAGTTAGTGACAAAGACTCGATTTGGAGGAGAAGGTTTTATCGATAGAATGGTGAAACACTTTTTGAAGGAGTTCGAGAGAAAGCACAAAATAGACATTAGTAGGAACTCAAGGGCCCTGAGGAGGTTGAGAAACGAGTGTGAGGAAGTCAGAAACAAACTTTCATTCGATTTTGATGCCACGATTTTCATAGATGCTTTATATGATGGAATTGATTTCTATTCATCGATGTCTCGTGCCAAGTTTGAGCAACTCAGCATAGACCTCTTTGATAATTTTATGGATACAATTAAGATTTGTCTTTCGGATGCTAAGATAAACAATAGCAGTGTAGATGAAGTTGTTCTTGTTGGTGGCTCATCAAGGGATCCCAAACTTCAGCAGCTATTGCAGGAGTTTTTCAAAAAAGGGAAGCATCTTTTTAGTATAATCGATCCGGATGACATAGTTGCTTGTGGTGCAGCTATACAATCTGCTTTGTTAAGTGGAGGCCTTAAGAATGTTCCACACGAAGTGAATCAATATCTTACAAGGCTGTCTCTTGCACAACCAGAACCAGAGCCAATACCAAGAAATATAGTGAATGATAAAAAAGTGAATGTTACAATTGAAGATAACAAATCTAAGATCATGATAGATTTTCAAGGTGGTGTTGGAATTACCGTTAATGCTCCTGGTTCGTTTAATGTCTCACTTCCTGATACTGCTCTAGTCCTTCCTATCAATGTTTGCTTTGCTACAGATTCTGATGGCATGTTAAATGTTTCTGCCGAGGTACAAAGTATTTCCAAAGACATCAAAATAACAAATGAGAATGTAAGGGTGGAGTTTCGAAGTCCTTGTTAA 1293 0.3743 MGRKYSDPIIQNNLLSWPFGIISSKDDKPVILVNYNGKEKHLSPEEISSLIFKKMLDVAEAHLKSPIKNAVITMPVYFNDSQRKATKDAAVIAGINVVQIINEPVAAALSYGLYNKAVCAENRNIVIVDLGGGTFGVSLITFKDYKFEIKLVTKTRFGGEGFIDRMVKHFLKEFERKHKIDISRNSRALRRLRNECEEVRNKLSFDFDATIFIDALYDGIDFYSSMSRAKFEQLSIDLFDNFMDTIKICLSDAKINNSSVDEVVLVGGSSRDPKLQQLLQEFFKKGKHLFSIIDPDDIVACGAAIQSALLSGGLKNVPHEVNQYLTRLSLAQPEPEPIPRNIVNDKKVNVTIEDNKSKIMIDFQGGVGITVNAPGSFNVSLPDTALVLPINVCFATDSDGMLNVSAEVQSISKDIKITNENVRVEFRSPC 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00895 430 Coils Coil 182 202 - -
Vivi6g00895 430 Gene3D Actin; Chain A, domain 4 158 241 - -
Vivi6g00895 430 SUPERFAMILY Actin-like ATPase domain 1 114 IPR043129 -
Vivi6g00895 430 Gene3D - 51 308 - -
Vivi6g00895 430 PANTHER HEAT SHOCK PROTEIN 70KDA 1 423 IPR013126 GO:0005524|GO:0140662
Vivi6g00895 430 Pfam Hsp70 protein 1 421 IPR013126 GO:0005524|GO:0140662
Vivi6g00895 430 Gene3D - 116 290 - -
Vivi6g00895 430 ProSitePatterns Heat shock hsp70 proteins family signature 2. 127 140 IPR018181 -
Vivi6g00895 430 SUPERFAMILY Actin-like ATPase domain 122 310 IPR043129 -
Vivi6g00895 430 Gene3D - 1 50 - -
Vivi6g00895 430 PRINTS 70kDa heat shock protein signature 133 143 - -
Vivi6g00895 430 PRINTS 70kDa heat shock protein signature 70 90 - -
Vivi6g00895 430 PRINTS 70kDa heat shock protein signature 260 276 - -
Vivi6g00895 430 PRINTS 70kDa heat shock protein signature 387 403 - -
Vivi6g00895 430 PRINTS 70kDa heat shock protein signature 293 313 - -
Vivi6g00895 430 FunFam Heat shock 70 kDa 158 241 - -
Vivi6g00895 430 FunFam heat shock 70 kDa protein-like 1 50 - -
Vivi6g00895 430 FunFam Endoplasmic reticulum chaperone BiP 25 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00895 Vivi-Chr6 27391559 27393434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00895 1 421 Calmodulin-binding Proteins AT3G12580 48.624 2.83e-129 385