Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00879 ATGTGGCCCTTTAAGGTCATTTCTGGGGATAATGGCAAACCGACGGTCCTTGTGAACTACAAGGGGGAGAAAAAGAACCTTGTTGCTGAGGAATTATCAGCTATGATTCTCACACAGATGCGAGAGATTGCAGGAGCTTTTTTGGAATCACCTGTCAAGAATGCAGTGATTACAGTACCTGCTTATTTTAACGATTCACAGCGAAGAGCCACCAAAGATGCAGGTAATATTGCTGGCCTCAATGTAATACGGATAATCGATGAACCTACTGCGGCTGCTCTTGCATACGGCCTTCAAAAGAGAGCTAATTGTGTTGAAGAGAGAACTATTTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTGTCTCTCCTTACTATTAAGAATAATGTTTTTGAAGTTAAGGCCACTGCTGGAGATACTCATCTTGGAGGAGAAGACTTTGATAATCGAATGGTGAATCACTTTATGAAGGAGTTTAAGAGGAAGAGTAAAGTTGACATTAGGGGGAACTCAAAAGCTCTGAGAAGATTGAGAACTGTCTGTGAGAGGGCAAAAAGGACACTTTCATACGACACTGAGGCCACGATTGACATAGATGCTATATATGAGGGAATTGACTTCTGTTCATCAATTACTCGGGCCAAGTTTGAGCAATTGAATATGGACCTGTTTGAAAAGTGTATGCAGACTGTTAAAAGCTGTCTTGTTGATGCTAAGATAGACAAGAGTAGTGTTGATGACATTGTTCTGGTTGGTGGCTCTTCTAGGATTCCTAAAGTGAAACAGTTGTTGCAGGACTTTTTCAAAGGAAAAGAATTATGCAAGAGCATTAACCCTGACGAGGCTGTTGCTTACGGTGCAGCTGTCCAGGCTGCTTTATTGAGTGATGGTGTTAAGAATGTTCCAGGCATAGTATTGCAAGATGTTACCCCGCTGTCGCTTGGTGTAGCAGTAGAAGGAGATCTCATGCATGTTGTGATTCCTAGGAATACTTCCATTCCTGTCAGAAAGAGAAACACATACGGTACATTGGAAGATAACCAATGCAGCGTCACGGTTATGGTGTACGAGGGTGAGAGAGTAAGAGCCAGTGATAACAACTTACTTGATTTGTTTAGTTTCTCTCTTCCTCCTGCTCCTCGACGTAGCATTCCTATCAAACAATATTTCTCTATAGATGGTGATGGAATAATAAACGTGTCTGTAGAGGAGAAAACAAGTGGTAATAAGAAAGAAATTACAATAACAAATGAAAATGGAAGACTGTCAAGGGAAGAAATTGAGAGAATGATTCAAGAGGCTGAATATTTTAAGGCTCAAGACATGAAGTTCAAAAAGAAAGCTAAAGCAATAAATGCTTTGGACGATTATCTCTACACCGTGAAGAAAGTAATGAAGGATGATTGTGTAAGTTCCAAGCTCAACCCTGTTGACAAAGTGAAGATTAATTCTGCAATGATAAAGGGGAAAAGTATGATTGCTGATAACAAGCAGGAAGATACGTTTAAGTTTGTGGATTGTTTGAAGGAGCTTGAGAGCGTCTTTGAATCTGCTATGAACAAGGTCAACAAAAGTTACTCTGATGATGAAAGTGATTCAGATTCCTAA 1611 0.401 MWPFKVISGDNGKPTVLVNYKGEKKNLVAEELSAMILTQMREIAGAFLESPVKNAVITVPAYFNDSQRRATKDAGNIAGLNVIRIIDEPTAAALAYGLQKRANCVEERTIFIFDLGGGTFDVSLLTIKNNVFEVKATAGDTHLGGEDFDNRMVNHFMKEFKRKSKVDIRGNSKALRRLRTVCERAKRTLSYDTEATIDIDAIYEGIDFCSSITRAKFEQLNMDLFEKCMQTVKSCLVDAKIDKSSVDDIVLVGGSSRIPKVKQLLQDFFKGKELCKSINPDEAVAYGAAVQAALLSDGVKNVPGIVLQDVTPLSLGVAVEGDLMHVVIPRNTSIPVRKRNTYGTLEDNQCSVTVMVYEGERVRASDNNLLDLFSFSLPPAPRRSIPIKQYFSIDGDGIINVSVEEKTSGNKKEITITNENGRLSREEIERMIQEAEYFKAQDMKFKKKAKAINALDDYLYTVKKVMKDDCVSSKLNPVDKVKINSAMIKGKSMIADNKQEDTFKFVDCLKELESVFESAMNKVNKSYSDDESDSDS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00879 536 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 300 452 IPR029047 -
Vivi6g00879 536 FunFam Heat shock protein ssb1 1 35 - -
Vivi6g00879 536 PANTHER HEAT SHOCK PROTEIN 70KDA 1 484 IPR013126 GO:0005524|GO:0140662
Vivi6g00879 536 FunFam Heat shock 70 kDa 144 227 - -
Vivi6g00879 536 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 301 456 IPR029047 -
Vivi6g00879 536 Pfam Hsp70 protein 1 521 IPR013126 GO:0005524|GO:0140662
Vivi6g00879 536 SUPERFAMILY Actin-like ATPase domain 107 295 IPR043129 -
Vivi6g00879 536 Gene3D - 101 275 - -
Vivi6g00879 536 SUPERFAMILY Actin-like ATPase domain 1 100 IPR043129 -
Vivi6g00879 536 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 451 526 IPR029048 -
Vivi6g00879 536 Gene3D - 36 293 - -
Vivi6g00879 536 Gene3D Actin; Chain A, domain 4 144 227 - -
Vivi6g00879 536 FunFam Heat shock 70 kDa protein 299 452 - -
Vivi6g00879 536 FunFam Endoplasmic reticulum chaperone BiP 12 112 - -
Vivi6g00879 536 ProSitePatterns Heat shock hsp70 proteins family signature 3. 249 263 IPR018181 -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 118 128 - -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 278 298 - -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 55 75 - -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 246 262 - -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 304 323 - -
Vivi6g00879 536 PRINTS 70kDa heat shock protein signature 384 400 - -
Vivi6g00879 536 Gene3D - 453 526 IPR029048 -
Vivi6g00879 536 Gene3D - 2 35 - -
Vivi6g00879 536 ProSitePatterns Heat shock hsp70 proteins family signature 2. 112 125 IPR018181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00879 Vivi-Chr6 26801520 26803145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00879 2 515 Calmodulin-binding Proteins AT3G12580 63.760 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00879 K03283 - gmx:102667578 682.174