Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00877 ATGCAGTTGTGGCCCTTTAAGGTCATTGCTGGTTTTAATGACAACCCAATGATCCTTGTTAATTACAGGGGCCAAGAAAAAAGCTTTTCTGCTGAGGAAATATCATCTATGATCCTCAGAAAAATGCGGGAGATCGCAGAGAAATTTTTGGAAACACCTATTGAAAATGCAGTGATTACAGTTCCGGCCTATTTCAACGATTCTCAGCGTAAAGCTACAATAGATGCTGGTACCATTGCAGGCTTGAATGTAAAGCGGATAATCAATGAACCTACTGCTGCCGCCCTTGCGTATGGCCTTCAAAAAAGACCTAATTTTGTTGAAGATAGAAACATTTTCATCTTTGATCTTGGTGGTGGAACTTTTGATGTATCTCTCCTCACAATTAAGAATAATGTCTTTCATGTTAAGGCTGTTGCTGGAGACACTCACCTCGGAGGAGAGGACTTTGACAACAGAATGATGAATCACTTTGTAGAGGAGATTAAAAGGAAGAACAAAGTAGACATTAGTGGAAACCCTGGATCTTTGAGGAGGCTAAGAACTAGCTGCGAGAGGGCGAAAAGGATCCTTTCTTTTGCTGTTGTTGCTACTGTTGAGGTAAATGCTTTGTTTCAGGGAATTGAGTTATCTTCATCTATCACTCGAGCAAAGTTTGAGATGATCAACATAGACCTCTTTGAAAAGTGTATGGAGATTGTCAGGAGATGCTTTGTGAATTCTGGAATGGACAAAAGTTGTGTAGATGATGTTGTCCTTATTGGTGGATCGTCCAGAATCCCCAAATTGCAACAACTATTGCAGGACTTTTTTAATGGGAAGGATTTGTGTATGAGCATCAACCCTGATGAAGCAGTGGCTTATGGGGCAGCTGTCCAGGCTGCTATGTTAAATGTCAAGTATGTTCCAAACTTAACGTTGCGAGATGTCATACCCTTGTCTCTTGGTACATCAGAAAAAGGAGATATTATGGATGTCGTGATTCCTAGGAACACTTCCATTCCTATCACTAAGAAGAAAACATATTTTACAGATGTAGATAACCAAAGTAGAGTTTCATTTAAGGTTTATGAGGGTGAGAGCATAATAGCTAGTGAGAACAACTTGCTCGGTGTGTTTTCTCTCTCACTTCCTCATGCACCTCGCGGTCTTCCTATCCAAGTATACTTTGCAATAGACGCGGATGGCATATTAAACTTGTCTGCAGAGGAAGAAACCAGTGGTACTAAGAGGGATATTACAGTAACACATGAAACAGAAAGCCTATCAACTGAAGAGCCTGAGAGAATGATTCAAGAAGCTGAGAACTTTAATGTTGAAGATAAGAAACCTGAGCAAAAAGCTAAAGCAATGAATGATTTGAACGATTATCTTTATCATGTGAGGCAAGTAATTGCTAATAATGATGTTAGTTCTTTGATTTCCCCCGTTGACAAATTGAAGATCTATACTGCAGTTGTGAAGGGCCAAAATTTGTTGGATGGAAACAAGGACGAAGAAACACATGTCTTAGTGGATTTTCTAAAGGAATTTCAGAGCATGGTTGATTCTGCTTTATACAAGATCACTATTGGAATCTGA 1581 0.3953 MQLWPFKVIAGFNDNPMILVNYRGQEKSFSAEEISSMILRKMREIAEKFLETPIENAVITVPAYFNDSQRKATIDAGTIAGLNVKRIINEPTAAALAYGLQKRPNFVEDRNIFIFDLGGGTFDVSLLTIKNNVFHVKAVAGDTHLGGEDFDNRMMNHFVEEIKRKNKVDISGNPGSLRRLRTSCERAKRILSFAVVATVEVNALFQGIELSSSITRAKFEMINIDLFEKCMEIVRRCFVNSGMDKSCVDDVVLIGGSSRIPKLQQLLQDFFNGKDLCMSINPDEAVAYGAAVQAAMLNVKYVPNLTLRDVIPLSLGTSEKGDIMDVVIPRNTSIPITKKKTYFTDVDNQSRVSFKVYEGESIIASENNLLGVFSLSLPHAPRGLPIQVYFAIDADGILNLSAEEETSGTKRDITVTHETESLSTEEPERMIQEAENFNVEDKKPEQKAKAMNDLNDYLYHVRQVIANNDVSSLISPVDKLKIYTAVVKGQNLLDGNKDEETHVLVDFLKEFQSMVDSALYKITIGI 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00877 526 Gene3D Actin; Chain A, domain 4 146 229 - -
Vivi6g00877 526 Gene3D - 451 523 IPR029048 -
Vivi6g00877 526 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 450 522 IPR029048 -
Vivi6g00877 526 PANTHER HEAT SHOCK PROTEIN 70KDA 1 469 IPR013126 GO:0005524|GO:0140662
Vivi6g00877 526 Pfam Hsp70 protein 2 511 IPR013126 GO:0005524|GO:0140662
Vivi6g00877 526 ProSitePatterns Heat shock hsp70 proteins family signature 2. 114 127 IPR018181 -
Vivi6g00877 526 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 302 453 IPR029047 -
Vivi6g00877 526 SUPERFAMILY Actin-like ATPase domain 3 102 IPR043129 -
Vivi6g00877 526 FunFam Endoplasmic reticulum chaperone BiP 11 112 - -
Vivi6g00877 526 FunFam Heat shock 70 kDa 146 229 - -
Vivi6g00877 526 FunFam Heat shock protein ssb1 1 37 - -
Vivi6g00877 526 Gene3D - 103 277 - -
Vivi6g00877 526 Gene3D - 38 295 - -
Vivi6g00877 526 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 300 450 IPR029047 -
Vivi6g00877 526 ProSitePatterns Heat shock hsp70 proteins family signature 3. 251 265 IPR018181 -
Vivi6g00877 526 Gene3D - 2 37 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 304 323 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 57 77 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 280 300 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 120 130 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 248 264 - -
Vivi6g00877 526 PRINTS 70kDa heat shock protein signature 383 399 - -
Vivi6g00877 526 SUPERFAMILY Actin-like ATPase domain 108 297 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00877 Vivi-Chr6 26772249 26773859 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00877 4 525 Calmodulin-binding Proteins AT3G12580 58.444 0.0 626