Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00857 ATGGCTTCTTCTTTACCTCTCTATCAACTAACGCCTTGTTTCTTCTCAAAAACCCAGTTCCAAGGTTTGCACCATAGCTATTTGTGGCGACCTACGTTTGGCTCTTGTGTTCAAAACAAACTGCGACCTGTTAAAGCTTCGGTTAATGCTCCCCCATTTCCATTGTTTCAGCCTCCCACAGTTGAAGATCCATCTTCTCAGTTGGAGCCTGTGGATCCGGATTTCTACAGGATAGGATATGTCCGAAGCATGCGAGCTTATGGAGTTGATTTTAAGGAAGGGCCAAATGGTTTTGGTGTGTATGCTTCTAAAGATGTTGAACCTCTTCGCCGACCAAGGGTTATAATGGAAATTCCTCTTGAATTGATGCTAACAATAAGCAAGAAGCTTCCGTGGATGTTTTTCCCTGATATAATTCCGATTGGTCATCCAATATTTGATATTATCAACTCGACAGATCCAGAGACAGATTGGGATTTACGATTAGCCTGCCTTCTCTTGTTTTCATTCGACTGCAAGGACAACTTTTGGCAGTATTACGGTGATTTCTTACCAAGTGCAGATGAAAGTACTAGCTTACTTCTAGCTTCAGAGGAGGAACTTTTGGAGCTGCAGGATCCCGATCTTGCTTCTACAATTAGAATTGAGCAACGACGAGTTTTAGATTTCTGGGAGAAGCACTGGCATACTGGTGCGCCCCTAAAAGTGAAACGTCTTGCGCGTGATCCTAAAAGGTTCACTTGGGCAGTGGGAATTGCACAGTCAAGATGTATCAACATGCAAATGAGAATGTGTGCATTAACTCAGGATGCAAATATGCTGATTCCTTATGCCGATATGCTGAACCATTCATTTGAGCCAAACTGTTTTTTCCATTGGCGGTTTAAGGACAGGATGCTTGAGGTTCTTATAAATGCTGGACAAAAGATTAAAAAAGGAGACGAGATGACAGTTGATTACATGAGTGCACAGAAGAATGACATGTTAATGCAAAGATACGGATTTTCCTCGCCAGTGAATCCTTGGGATGTAATCGAATTCTCGGGAAAGGCACAAATCCATTTGGATTCCTTCTTGTCAGTTTTCAACATATCAGGCCTTCCGGAAGAGTATTATCGTAACGAAGTTCTATCGAATGCTGGAGATACTTTTGTTGATGGAGCGGTCATAGCTGCAGCGCGAACATTGCCAACATGGTCAGTTGGAGACATGCCTCCAATCCCAAGCAAAGAAAGGAAGGCTGCAAAGGCAATACAACTCGAGTGCAAACAAATGCTTGCAAAATTTGCTACCACCTCTAAGCAAGACAAAAAATTGTTAGATTCTTCACCGGAAGCCACGAGAACGCTTGAAGCTGCAATAAAGTATAGATTGCACAGGAAACTGTTAATCGAAAAAGTTTTCCTTGCATTGGAGATCTATGTAGAGCAATTACTGTTCTGA 1443 0.4227 MASSLPLYQLTPCFFSKTQFQGLHHSYLWRPTFGSCVQNKLRPVKASVNAPPFPLFQPPTVEDPSSQLEPVDPDFYRIGYVRSMRAYGVDFKEGPNGFGVYASKDVEPLRRPRVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTDPETDWDLRLACLLLFSFDCKDNFWQYYGDFLPSADESTSLLLASEEELLELQDPDLASTIRIEQRRVLDFWEKHWHTGAPLKVKRLARDPKRFTWAVGIAQSRCINMQMRMCALTQDANMLIPYADMLNHSFEPNCFFHWRFKDRMLEVLINAGQKIKKGDEMTVDYMSAQKNDMLMQRYGFSSPVNPWDVIEFSGKAQIHLDSFLSVFNISGLPEEYYRNEVLSNAGDTFVDGAVIAAARTLPTWSVGDMPPIPSKERKAAKAIQLECKQMLAKFATTSKQDKKLLDSSPEATRTLEAAIKYRLHRKLLIEKVFLALEIYVEQLLF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00857 480 CDD SET_LSMT 88 335 - -
Vivi6g00857 480 Gene3D set domain protein methyltransferase, domain 1 81 335 - -
Vivi6g00857 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 71 450 - -
Vivi6g00857 480 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 81 335 - -
Vivi6g00857 480 Pfam SET domain 97 320 IPR001214 GO:0005515
Vivi6g00857 480 ProSiteProfiles SET domain profile. 76 321 IPR001214 GO:0005515
Vivi6g00857 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 332 472 IPR036464 -
Vivi6g00857 480 SUPERFAMILY SET domain 96 336 IPR046341 -
Vivi6g00857 480 Pfam Rubisco LSMT substrate-binding 409 461 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00857 Vivi-Chr6 26232451 26236874 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi6g00857 SET 5.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00857 - - tpra:123887006 799.66