Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00843 ATGAAGTGCAGTAGTCACAAAGGGTTTTCTGAGAATTCACAAGGTGAGAGGATTTGTAGGATTTGTCATCTGGCTTTTGGACCTGCGTCAGATGCAGCAATTGTCGTAAGTGCGAGCGCTACGAGTGGAGATTTTATTCAACTTGGTTGCGTGTGTAAAGACGAGCTCGACATTGCTCATGTTTATTGTGCTGAAGTGTGGTTCAAGCTAAAGGGAAGCAGATTATGTGAAATATGTGGCGAGACTGAAAAAAATGTCTCGGGTGTTACTACTAACGGAGTTATGGAAGAGTGGAATGATAGAAGATTCTCCGGAGATATTGCTGCTCAAATTAAGCACAATAACAAATCTCTTCATTTCAAAGTTGATACTGAATCAAATGTGTTGACGATATTTACTCTCACAGATTTCGTGACTTCTGCTAAAGTCGTTGCTTTTATTCGATTACCTGATTACAAATCCGGCAAGATTGAAGTTCAATATCTTCATGATCATGCTGGTTTTACTACTGCTGTTGATTTGAGTCGCAACCCTGCTATTGATTTTTCTGTGACAATTGGTACTCCTGATCTTCAGGACGACTGTGAAGATAGGGATTTATTGAATGGACTTAGTGAAGATATCTTAGAACTTTCATCGTCTGGTTGA 648 0.3966 MKCSSHKGFSENSQGERICRICHLAFGPASDAAIVVSASATSGDFIQLGCVCKDELDIAHVYCAEVWFKLKGSRLCEICGETEKNVSGVTTNGVMEEWNDRRFSGDIAAQIKHNNKSLHFKVDTESNVLTIFTLTDFVTSAKVVAFIRLPDYKSGKIEVQYLHDHAGFTTAVDLSRNPAIDFSVTIGTPDLQDDCEDRDLLNGLSEDILELSSSG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00843 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 79 IPR013083 -
Vivi6g00843 215 SMART ringv_2 18 80 IPR011016 GO:0008270
Vivi6g00843 215 Gene3D Porin 80 194 IPR023614 -
Vivi6g00843 215 PANTHER ZINC FINGER, RING-CH-TYPE 9 107 - -
Vivi6g00843 215 SUPERFAMILY RING/U-box 14 81 - -
Vivi6g00843 215 ProSiteProfiles Zinc finger RING-CH-type profile. 11 86 IPR011016 GO:0008270
Vivi6g00843 215 Pfam Eukaryotic porin 88 188 IPR027246 GO:0005741|GO:0055085
Vivi6g00843 215 Pfam RING-variant domain 19 79 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00843 Vivi-Chr6 25551136 25554086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00843 13 88 C3H Transcription Factor Family AT5G05830 50.000 2.39e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00843 - - vvo:131613659 345.895