Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g00822 ATGGCACACAAAGAATTTGCATCTTCTTCTTTTCCCTCAAACTCCAACAATGATTCCTCAGAAAACAACCCTGGTATATTTTCTATACATTTAGATAACCCTCTTTCTAGGGTGGGATGCAACAACGAGTTCACAGTCTCTAACACCACCACCAACACCAACAGCAATGACACATTGGTCATGCCACTTCCATCATCTACACAACCTTCATTTGGTAGGTATGTGGATCAACCATCATCTGGTAGGTATGTTAATCAGCCTCAAGATCCACCGGAGGACCCTACCAAATCCTCATCTGAAAAGAGAATGGGTAGACCATTGGGCTCTAAGAACAAGCCCAAACCACACATCGTTATCGAGGAAGACACAGAAAACTTCACAGAGCTGGTAGGACTTGAGATCCCAATAGGAGAAGATATTGTAGAGTATATAATCAAATATGCTCAACAACGTCAAGCTAACATAATAGTGTCGAGGGGTTTCAGACTTATCTCTAATGTTACCATTCTTGCTCCAGGATCTCGTGACCCATTATTACCCATCGAAGGACCCATACATATGACATCTTTATTTGGAACATATATAAATCCACATTGTCAATGTTCTCCTCCACAGTTCATAGCTCATCCGCCATGTTCCTCTTTTACCGTATACTTCTCTAGTCCTAATGGATATGCGTTTGGAGGAGTTGTTGGTGGAAAGATTACTGTTGCTAGTGTTATTTTTATTAATGCCACTATTTCTAGGAAAACAACGTTCCACAAGGCAAACTCCACCAATAGAATTGTTTGA 792 0.4078 MAHKEFASSSFPSNSNNDSSENNPGIFSIHLDNPLSRVGCNNEFTVSNTTTNTNSNDTLVMPLPSSTQPSFGRYVDQPSSGRYVNQPQDPPEDPTKSSSEKRMGRPLGSKNKPKPHIVIEEDTENFTELVGLEIPIGEDIVEYIIKYAQQRQANIIVSRGFRLISNVTILAPGSRDPLLPIEGPIHMTSLFGTYINPHCQCSPPQFIAHPPCSSFTVYFSSPNGYAFGGVVGGKITVASVIFINATISRKTTFHKANSTNRIV 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g00822 263 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 82 254 IPR014476 GO:0003680
Vivi6g00822 263 MobiDBLite consensus disorder prediction 46 116 - -
Vivi6g00822 263 MobiDBLite consensus disorder prediction 7 28 - -
Vivi6g00822 263 SUPERFAMILY AF0104/ALDC/Ptd012-like 131 253 - -
Vivi6g00822 263 Gene3D - 129 260 - -
Vivi6g00822 263 MobiDBLite consensus disorder prediction 46 93 - -
Vivi6g00822 263 MobiDBLite consensus disorder prediction 1 28 - -
Vivi6g00822 263 Pfam Plants and Prokaryotes Conserved (PCC) domain 132 243 IPR005175 -
Vivi6g00822 263 ProSiteProfiles PPC domain profile profile. 124 263 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g00822 Vivi-Chr6 24650872 24651663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g00822 104 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 30.968 1.92e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g00822 - - vvo:131613386 510.76